Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0671 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACGACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACTACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTGGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1161 44.27 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7578908 7583328 + CePI673135_06g006710.1 Cec06g0671 205408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0671 386 Gene3D - 14 99 - -
Cec06g0671 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Cec06g0671 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 383 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cec06g0671 386 Pfam Magnesium transporter MRS2-like 40 229 - -
Cec06g0671 386 Pfam Magnesium transporter MRS2-like 266 313 - -
Cec06g0671 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Cec06g0671 386 Coils Coil 187 214 - -
Cec06g0671 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
Cec06g0671 386 Gene3D Magnesium transport protein CorA, transmembrane region 104 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0671 K16075 - - csv:101203841 688.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0026 Cec-Chr2:264750 Cec06g0671 Cec-Chr6:7578908 1.60E-75 transposed
Cec02g0743 Cec-Chr2:8076644 Cec06g0671 Cec-Chr6:7578908 6.70E-78 transposed
Cec05g1124 Cec-Chr5:10038779 Cec06g0671 Cec-Chr6:7578908 2.70E-86 transposed
Cec08g1072 Cec-Chr8:22578531 Cec06g0671 Cec-Chr6:7578908 1.10E-67 transposed
Cec10g1297 Cec-Chr10:27136508 Cec06g0671 Cec-Chr6:7578908 2.90E-88 transposed
Cec06g0671 Cec-Chr6:7578908 Cec07g0092 Cec-Chr7:953470 3.80E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1297 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cec08g1072 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Cec06g0671 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Cec07g0092 . 594 966 MRS2 Gene Family AT5G64560 68.8 1.8e-131 466.1
Cec02g0743 . 14 495 MRS2 Gene Family AT3G19640 64.6 7.8e-156 547.4
Cec05g1124 . 53 443 MRS2 Gene Family AT3G58970 69.1 4.9e-141 498.0
Cec02g0026 . 1 427 MRS2 Gene Family AT3G58970 60.4 4.9e-125 444.9
Cec08g1072 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Cec10g1297 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cec06g0671 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Cec07g0092 . 594 928 MRS2 Gene Family AT5G09690 63.7 2.4e-108 389.0
Cec10g1297 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.6e-78 288.1
Cec06g0671 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Cec07g0092 . 630 888 MRS2 Gene Family AT5G09720 61.7 4.8e-76 281.6
Cec10g1297 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cec08g1072 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Cec01g1374 . 16 439 MRS2 Gene Family AT5G22830 68.5 1.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58