Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0707 ATGAATTCTTCATTCTTTCACTCCCAAAACGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCGGGCAGGCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCAGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCACCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCAGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 51.5 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSPGQAPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSTAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8106583 8107281 + CePI673135_06g007070.1 Cec06g0707 205444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0707 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 MobiDBLite consensus disorder prediction 73 87 - -
Cec06g0707 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Cec06g0707 232 MobiDBLite consensus disorder prediction 60 91 - -
Cec06g0707 232 PANTHER DNA-BINDING DOMAIN 54 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec06g0707 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Cec06g0707 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0707 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2049 Cec-Chr4:38578873 Cec06g0707 Cec-Chr6:8106583 1.80E-27 dispersed
Cec04g2050 Cec-Chr4:38579755 Cec06g0707 Cec-Chr6:8106583 6.20E-25 dispersed
Cec05g0501 Cec-Chr5:3996755 Cec06g0707 Cec-Chr6:8106583 6.30E-68 dispersed
Cec06g0707 Cec-Chr6:8106583 Cec07g0130 Cec-Chr7:1377182 2.30E-41 dispersed
Cec06g0706 Cec-Chr6:8054940 Cec06g0707 Cec-Chr6:8106583 1.90E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29762 PF00847 AP2 6.00E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0707 K14516 - csv:101206564 399.438