Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0764 ATGGTGAAAGTTAGGAATGGGGTAGAGTTGGCAGTTTGCAAGTTCATTGTTGATGAGGTCAACAAATTAGGGTTTATGGGAGGTTCATCAAGGATGTTTAAGTCTTGTGAGATTGGAGGGGAGGTGGGTTTGTTGGCTTGGACAGGGTGTAAAGATGATGGGGTGTGCAAGATAACATTTTCAGTGAAGATTGTGAAAGGCTCAATTCTAGTGATTGATTGGGACCATGAAATTGAAGCTGCTTTCATATCCTTCTACAAAATACTCTTCACCAAGGATTCTGGAATGAGGTTCCTGCCACAGCCTATTGATTGGTCTCTCATCAGCACTGAACAATGCAGAATGCTTGAGTCTCCTTTAACAGAAGAGGAAATATGGTTGGCAGTTGAGGCTTTGGGGTTAACTCGTGAGACTAGTCGAGAGAAAGAAATCAGGGATGACGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTGGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATATCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACCAATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCTTTGACCTCTGCAAGTTCTCAAAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAGCCGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCGGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAAGCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAGCTCGACAAGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTTTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGGATAATACATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCGGAAAAACGGAGGAAAATAGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2379 42.58 MVKVRNGVELAVCKFIVDEVNKLGFMGGSSRMFKSCEIGGEVGLLAWTGCKDDGVCKITFSVKIVKGSILVIDWDHEIEAAFISFYKILFTKDSGMRFLPQPIDWSLISTEQCRMLESPLTEEEIWLAVEALGLTRETSREKEIRDDVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLALGLPILQRFLDEREKSGKISEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLTSASSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQPGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKAGSIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQDNTSVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKIENLRRKRKEEKKRLRDQRRNKRKQMKGKI 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8926406 8942151 - CePI673135_06g007640.1 Cec06g0764 205501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0764 792 Pfam Helicase conserved C-terminal domain 457 564 IPR001650 -
Cec06g0764 792 CDD DEADc_DDX24 170 433 - -
Cec06g0764 792 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 407 IPR014001 -
Cec06g0764 792 CDD SF2_C_DEAD 445 574 - -
Cec06g0764 792 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 612 IPR001650 -
Cec06g0764 792 MobiDBLite consensus disorder prediction 763 792 - -
Cec06g0764 792 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Cec06g0764 792 SMART helicmild6 484 565 IPR001650 -
Cec06g0764 792 SMART ultradead3 178 417 IPR014001 -
Cec06g0764 792 Coils Coil 749 787 - -
Cec06g0764 792 Pfam DEAD/DEAH box helicase 183 390 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec06g0764 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 580 IPR027417 -
Cec06g0764 792 Gene3D - 133 407 IPR027417 -
Cec06g0764 792 MobiDBLite consensus disorder prediction 744 792 - -
Cec06g0764 792 Gene3D - 434 679 IPR027417 -
Cec06g0764 792 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724(InterPro)
Cec06g0764 792 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 141 789 IPR050079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0764 K14805 - - csv:101209958 1179.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1136 Cec-Chr5:10214720 Cec06g0764 Cec-Chr6:8926406 2.70E-06 dispersed
Cec06g0764 Cec-Chr6:8926406 Cec09g1042 Cec-Chr9:10090466 3.40E-52 dispersed
Cec06g0764 Cec-Chr6:8926406 Cec06g1928 Cec-Chr6:32676692 1.80E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31