Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g0796 | ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATAGCTCACGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGCTGGAAAGTGATGATGTGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCATAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCAAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGCGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGAGTTTTCAAGCTACTACTGCCCCTACTCTATTGATCTGCTCAAAACTACCGTGCTCCGCCGCTCCATCGATTCACGCTCCGTTGCTCAGGTCGCACCCTTTGTGCTTCGTCGCTCAGATCGCACCACCACTCAGATTTGA | 1455 | 46.87 | MAALSKWHSLSLFALALVFFVTIAHVRKEETSEIRTVLATEFQSSSNSSMATRLESDDVEQEFNNEHAVDNPDEIAASVEMSIHNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAEFSSYYCPYSIDLLKTTVLRRSIDSRSVAQVAPFVLRRSDRTTTQI | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9552578 | 9560636 | - | CePI673135_06g007960.1 | Cec06g0796 | 205533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g0796 | 484 | Pfam | Pectate lyase | 187 | 364 | IPR002022 | - | |
Cec06g0796 | 484 | Gene3D | - | 100 | 440 | IPR012334 | - | |
Cec06g0796 | 484 | FunFam | Pectate lyase | 100 | 441 | - | - | |
Cec06g0796 | 484 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Cec06g0796 | 484 | SUPERFAMILY | Pectin lyase-like | 77 | 417 | IPR011050 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Cec06g0796 | 484 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Cec06g0796 | 484 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 438 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2352 | Cec-Chr5:34761519 | Cec06g0796 | Cec-Chr6:9552578 | 3.40E-155 | dispersed | |
Cec06g0796 | Cec-Chr6:9552578 | Cec09g2059 | Cec-Chr9:37643072 | 3.40E-167 | dispersed | |
Cec05g0410 | Cec-Chr5:3382931 | Cec06g0796 | Cec-Chr6:9552578 | 8.40E-213 | wgd | |
Cec06g0796 | Cec-Chr6:9552578 | Cec07g0213 | Cec-Chr7:2141086 | 2.20E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g0796 | K01728 | - | csv:101217580 | 852.047 |