Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0796 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATAGCTCACGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGCTGGAAAGTGATGATGTGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCATAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCAAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGCGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGAGTTTTCAAGCTACTACTGCCCCTACTCTATTGATCTGCTCAAAACTACCGTGCTCCGCCGCTCCATCGATTCACGCTCCGTTGCTCAGGTCGCACCCTTTGTGCTTCGTCGCTCAGATCGCACCACCACTCAGATTTGA 1455 46.87 MAALSKWHSLSLFALALVFFVTIAHVRKEETSEIRTVLATEFQSSSNSSMATRLESDDVEQEFNNEHAVDNPDEIAASVEMSIHNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAEFSSYYCPYSIDLLKTTVLRRSIDSRSVAQVAPFVLRRSDRTTTQI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9552578 9560636 - CePI673135_06g007960.1 Cec06g0796 205533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0796 484 Pfam Pectate lyase 187 364 IPR002022 -
Cec06g0796 484 Gene3D - 100 440 IPR012334 -
Cec06g0796 484 FunFam Pectate lyase 100 441 - -
Cec06g0796 484 SMART amb_all 175 372 IPR002022 -
Cec06g0796 484 SUPERFAMILY Pectin lyase-like 77 417 IPR011050 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cec06g0796 484 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cec06g0796 484 PANTHER PECTATE LYASE 18-RELATED 15 438 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2352 Cec-Chr5:34761519 Cec06g0796 Cec-Chr6:9552578 3.40E-155 dispersed
Cec06g0796 Cec-Chr6:9552578 Cec09g2059 Cec-Chr9:37643072 3.40E-167 dispersed
Cec05g0410 Cec-Chr5:3382931 Cec06g0796 Cec-Chr6:9552578 8.40E-213 wgd
Cec06g0796 Cec-Chr6:9552578 Cec07g0213 Cec-Chr7:2141086 2.20E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0796 K01728 - csv:101217580 852.047