Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0816 ATGGCTGTGACAGCTTTGCTGTACCTTTTGCTTTTTTGGTTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCATCTGTTCAGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTACCACTTTAGCAAAGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATATCTGATTCTTCTCCATGCCCAAGTGCAGCGACGATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCTGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACCGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAAGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTTGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1671 45.18 MAVTALLYLLLFWFFESLPYYWELFHLFRNCGKIFLLTGGEESRKRAFRYHFSKVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSCMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10014987 10019907 + CePI673135_06g008160.1 Cec06g0816 205553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0816 556 SUPERFAMILY ARID-like 108 214 IPR036431 GO:0003677(InterPro)
Cec06g0816 556 FunFam High mobility group B protein 15 105 217 - -
Cec06g0816 556 SMART ARID_2 108 198 - -
Cec06g0816 556 SMART hmgende2 343 412 IPR009071 -
Cec06g0816 556 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 89 460 - -
Cec06g0816 556 MobiDBLite consensus disorder prediction 324 338 - -
Cec06g0816 556 Coils Coil 469 489 - -
Cec06g0816 556 Coils Coil 393 413 - -
Cec06g0816 556 ProSiteProfiles ARID domain profile. 111 202 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 MobiDBLite consensus disorder prediction 444 502 - -
Cec06g0816 556 CDD HMG-box_AtHMGB9-like 344 410 - -
Cec06g0816 556 SMART bright_3 112 203 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 CDD ARID_HMGB9-like 113 198 IPR045303 GO:0003677(InterPro)
Cec06g0816 556 Pfam ARID/BRIGHT DNA binding domain 114 198 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 Gene3D High mobility group box domain 328 423 IPR036910 -
Cec06g0816 556 MobiDBLite consensus disorder prediction 315 351 - -
Cec06g0816 556 MobiDBLite consensus disorder prediction 470 490 - -
Cec06g0816 556 Gene3D - 105 205 IPR036431 GO:0003677(InterPro)
Cec06g0816 556 Pfam HMG (high mobility group) box 344 411 IPR009071 -
Cec06g0816 556 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 344 411 IPR009071 -
Cec06g0816 556 SUPERFAMILY HMG-box 337 416 IPR036910 -
Cec06g0816 556 FunFam High mobility group B protein 15 326 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0816 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1699 Cec-Chr5:28275914 Cec06g0816 Cec-Chr6:10014987 3.80E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g0816 . 90 441 ARID Transcription Factor Family AT1G04880 58.4 9.5e-108 387.5
Cec10g0009 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cec05g1699 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.1e-111 400.2
Cec10g0009 . 303 624 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cec07g1552 . 174 954 ARID Transcription Factor Family AT3G43240 59.0 3.7e-266 914.4
Cec09g0134 . 92 853 ARID Transcription Factor Family AT3G43240 58.5 7.5e-259 890.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29769 PF01388 ARID 2.40E-17 CL0123 Cec TR