Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0826 ATGGGTAAAGAAAAGATTCATATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTTGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGATGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTCGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGCGGTATTGGAACTGTCCCTGTGGGACGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGGCTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTCATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAGCTCGAAAAAGAGCCCAAATTCTTGAAAAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACCTTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA 1344 48.88 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10137765 10139667 - CePI673135_06g008260.1 Cec06g0826 205563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0826 447 FunFam Elongation factor 1-alpha 323 430 - -
Cec06g0826 447 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cec06g0826 447 FunFam Elongation factor 1-alpha 229 316 - -
Cec06g0826 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 CDD EF1_alpha 9 227 - -
Cec06g0826 447 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cec06g0826 447 Gene3D - 1 228 IPR027417 -
Cec06g0826 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cec06g0826 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Cec06g0826 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec06g0826 447 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Cec06g0826 447 CDD EF1_alpha_II 230 320 - -
Cec06g0826 447 CDD EF1_alpha_III 323 426 - -
Cec06g0826 447 FunFam Elongation factor 1-alpha 1 226 - -
Cec06g0826 447 Gene3D Translation factors 323 430 - -
Cec06g0826 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cec06g0826 447 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cec06g0826 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cec06g0826 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cec06g0826 447 Gene3D Translation factors 229 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1619 Cec-Chr1:30853062 Cec06g0826 Cec-Chr6:10137765 3.60E-76 dispersed
Cec02g2207 Cec-Chr2:39514598 Cec06g0826 Cec-Chr6:10137765 2.50E-257 dispersed
Cec06g0826 Cec-Chr6:10137765 Cec09g2149 Cec-Chr9:38438709 1.50E-254 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0826 K03231 - csv:101215193 885.174