Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0827 ATGACGATCAATTCTCACTCTCTCTTATTATCAGGAGAATTGTCGATTTCGGCCAGATCAGAGGAAGATCGTCGATTTTGGCTAGATCTTGCGAGGGAATGGAACAGAGGATGGTCGTCAGAACCATGGAACGGAGGTTGTGCTTGGTCGTCGAGCGAAAGGGCGGAAGGAAGAATCCAATCCGCCTATTTGCTGCAAGGATTTCGATACGGATCCAAGAATTTGCCATCATCAATGGCGGGCCTATCTCTCAAGTGTGGGGATTGTGGCGCACTGTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCTGTGCTTAATCTTGTCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACCGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCCCCAAAGGTAGATGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTAAACAAGAATATTTTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTTTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTGGTTGAACATGAAAATGATCCGGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAACTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCGGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTGCGGCACCTGTTGTTGAAGAAAAAAAGATCTCATTACCCGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCGTTAAAGTCCAATTACAAGGAGGATGATGCTAAAGTGAAGAGAGCATTTCAAACCCTTCTAACATATGTGGGAAACGTGGTAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTGGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATTGAAGGTGGCGAGTTCTTGTTTCTGCCTAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCGACTCTGCTATAAAGAATCCCTTCTTTGGCGTTCTCTAA 1470 45.58 MTINSHSLLLSGELSISARSEEDRRFWLDLAREWNRGWSSEPWNGGCAWSSSERAEGRIQSAYLLQGFRYGSKNLPSSMAGLSLKCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPVRPASKAEQMRECLRSLKSNYKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLGNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGVL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10165603 10176372 + CePI673135_06g008270.1 Cec06g0827 205564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0827 489 SUPERFAMILY UBA-like 175 242 IPR009060 GO:0005515(InterPro)
Cec06g0827 489 MobiDBLite consensus disorder prediction 261 285 - -
Cec06g0827 489 MobiDBLite consensus disorder prediction 320 348 - -
Cec06g0827 489 MobiDBLite consensus disorder prediction 164 178 - -
Cec06g0827 489 CDD PUB_UBA_plant 383 489 - -
Cec06g0827 489 CDD UBA_PUB_plant 188 236 - -
Cec06g0827 489 MobiDBLite consensus disorder prediction 159 184 - -
Cec06g0827 489 Gene3D - 191 235 - -
Cec06g0827 489 MobiDBLite consensus disorder prediction 246 285 - -
Cec06g0827 489 PANTHER F13M7.16 PROTEIN 79 489 - -
Cec06g0827 489 Pfam PUB domain 396 467 IPR018997 -
Cec06g0827 489 ProSitePatterns Zinc finger C2H2 type domain signature. 86 108 IPR013087 -
Cec06g0827 489 Gene3D - 381 479 - -
Cec06g0827 489 SMART uba_6 190 228 IPR015940 -
Cec06g0827 489 SUPERFAMILY PUG domain-like 376 485 IPR036339 -
Cec06g0827 489 ProSitePatterns Zinc finger C2H2 type domain signature. 123 145 IPR013087 -
Cec06g0827 489 Pfam UBA-like domain 190 237 IPR015940 -
Cec06g0827 489 Coils Coil 259 293 - -
Cec06g0827 489 Coils Coil 302 339 - -
Cec06g0827 489 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 188 229 IPR015940 -
Cec06g0827 489 SMART PGNneu 399 462 - -
Cec06g0827 489 MobiDBLite consensus disorder prediction 320 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0827 Cec-Chr6:10165603 Cec11g1303 Cec-Chr11:27055331 2.10E-60 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0827 K24348 - csv:101215434 702.975