Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g0827 | ATGACGATCAATTCTCACTCTCTCTTATTATCAGGAGAATTGTCGATTTCGGCCAGATCAGAGGAAGATCGTCGATTTTGGCTAGATCTTGCGAGGGAATGGAACAGAGGATGGTCGTCAGAACCATGGAACGGAGGTTGTGCTTGGTCGTCGAGCGAAAGGGCGGAAGGAAGAATCCAATCCGCCTATTTGCTGCAAGGATTTCGATACGGATCCAAGAATTTGCCATCATCAATGGCGGGCCTATCTCTCAAGTGTGGGGATTGTGGCGCACTGTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCTGTGCTTAATCTTGTCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACCGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCCCCAAAGGTAGATGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTAAACAAGAATATTTTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTTTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTGGTTGAACATGAAAATGATCCGGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAACTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCGGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTGCGGCACCTGTTGTTGAAGAAAAAAAGATCTCATTACCCGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCGTTAAAGTCCAATTACAAGGAGGATGATGCTAAAGTGAAGAGAGCATTTCAAACCCTTCTAACATATGTGGGAAACGTGGTAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTGGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATTGAAGGTGGCGAGTTCTTGTTTCTGCCTAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCGACTCTGCTATAAAGAATCCCTTCTTTGGCGTTCTCTAA | 1470 | 45.58 | MTINSHSLLLSGELSISARSEEDRRFWLDLAREWNRGWSSEPWNGGCAWSSSERAEGRIQSAYLLQGFRYGSKNLPSSMAGLSLKCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPVRPASKAEQMRECLRSLKSNYKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLGNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGVL | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10165603 | 10176372 | + | CePI673135_06g008270.1 | Cec06g0827 | 205564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g0827 | 489 | SUPERFAMILY | UBA-like | 175 | 242 | IPR009060 | GO:0005515(InterPro) | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 261 | 285 | - | - | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 320 | 348 | - | - | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Cec06g0827 | 489 | CDD | PUB_UBA_plant | 383 | 489 | - | - | |
Cec06g0827 | 489 | CDD | UBA_PUB_plant | 188 | 236 | - | - | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 159 | 184 | - | - | |
Cec06g0827 | 489 | Gene3D | - | 191 | 235 | - | - | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 246 | 285 | - | - | |
Cec06g0827 | 489 | PANTHER | F13M7.16 PROTEIN | 79 | 489 | - | - | |
Cec06g0827 | 489 | Pfam | PUB domain | 396 | 467 | IPR018997 | - | |
Cec06g0827 | 489 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 108 | IPR013087 | - | |
Cec06g0827 | 489 | Gene3D | - | 381 | 479 | - | - | |
Cec06g0827 | 489 | SMART | uba_6 | 190 | 228 | IPR015940 | - | |
Cec06g0827 | 489 | SUPERFAMILY | PUG domain-like | 376 | 485 | IPR036339 | - | |
Cec06g0827 | 489 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 123 | 145 | IPR013087 | - | |
Cec06g0827 | 489 | Pfam | UBA-like domain | 190 | 237 | IPR015940 | - | |
Cec06g0827 | 489 | Coils | Coil | 259 | 293 | - | - | |
Cec06g0827 | 489 | Coils | Coil | 302 | 339 | - | - | |
Cec06g0827 | 489 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 188 | 229 | IPR015940 | - | |
Cec06g0827 | 489 | SMART | PGNneu | 399 | 462 | - | - | |
Cec06g0827 | 489 | MobiDBLite | consensus disorder prediction | 320 | 357 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g0827 | Cec-Chr6:10165603 | Cec11g1303 | Cec-Chr11:27055331 | 2.10E-60 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g0827 | K24348 | - | csv:101215434 | 702.975 |