Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0928 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCCCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCGTACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTTCTTCGCCGCCCCCTCCGGACACTACCCCTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCTCCGTCTACCAACTTGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTCGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTGGTGGTAGTGGTTGTGGCGTTGCTTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGAGCAGTGCTGAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCTATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGGAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACCGAAGATGGGGTGTATGACGGTCTAGTAGATCCCAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCTGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGACCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCATTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1911 51.91 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLVPPPPDASSQPPPASSPPPSTTSSPPPPDTTPPSPPTSSPSPPTTPSSSSPPPPPPPSTNLTAPPQLPSPTPPSASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALLVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGAVLKPSPPPASRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12711115 12713682 + CePI673135_06g009280.1 Cec06g0928 205665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0928 636 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 98 585 IPR047117 -
Cec06g0928 636 PRINTS Proline rich extensin signature 26 43 - -
Cec06g0928 636 PRINTS Proline rich extensin signature 4 20 - -
Cec06g0928 636 PRINTS Proline rich extensin signature 47 72 - -
Cec06g0928 636 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524(InterPro)
Cec06g0928 636 FunFam Proline-rich receptor-like protein kinase PERK1 344 552 - -
Cec06g0928 636 MobiDBLite consensus disorder prediction 1 109 - -
Cec06g0928 636 Gene3D Transferase(Phosphotransferase) domain 1 344 553 - -
Cec06g0928 636 FunFam proline-rich receptor-like protein kinase PERK1 246 343 - -
Cec06g0928 636 MobiDBLite consensus disorder prediction 187 201 - -
Cec06g0928 636 ProSiteProfiles Protein kinase domain profile. 268 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0928 636 MobiDBLite consensus disorder prediction 164 239 - -
Cec06g0928 636 Pfam Protein tyrosine and serine/threonine kinase 272 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0928 636 MobiDBLite consensus disorder prediction 593 618 - -
Cec06g0928 636 SMART serkin_6 268 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0928 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0928 636 Gene3D Phosphorylase Kinase; domain 1 243 343 - -
Cec06g0928 636 MobiDBLite consensus disorder prediction 110 130 - -
Cec06g0928 636 SUPERFAMILY Protein kinase-like (PK-like) 243 541 IPR011009 -
Cec06g0928 636 MobiDBLite consensus disorder prediction 220 239 - -
Cec06g0928 636 MobiDBLite consensus disorder prediction 593 636 - -
Cec06g0928 636 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0928 Cec-Chr6:12711115 Cec11g0464 Cec-Chr11:4945963 8.30E-158 dispersed
Cec02g0222 Cec-Chr2:2127350 Cec06g0928 Cec-Chr6:12711115 7.90E-64 transposed
Cec11g0254 Cec-Chr11:2691823 Cec06g0928 Cec-Chr6:12711115 1.90E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72080 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0928 - - - 0.0