Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0948 ATGGATAATTTACCCCCGCTAAATGCTCAAATTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCGTTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGTTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGTTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCAGAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTTGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCACCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGCAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 1764 44.16 MDNLPPLNAQIDSAEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPVVTKASHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHVDHANNLAYIQQAANAAITGAIGSSGYVCLPTSKKRKGPELCFGPVGKDSPLNSIPEFHQANNVMSSGTSTSSPFPVAHVGNGSPAASKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGLAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13038286 13043680 - CePI673135_06g009480.1 Cec06g0948 205685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0948 587 SMART CXC_2 198 239 IPR033467 -
Cec06g0948 587 SMART CXC_2 113 153 IPR033467 -
Cec06g0948 587 PANTHER TESMIN/TSO1-RELATED 45 510 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cec06g0948 587 MobiDBLite consensus disorder prediction 50 81 - -
Cec06g0948 587 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Cec06g0948 587 MobiDBLite consensus disorder prediction 1 23 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 395 424 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 378 394 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 374 438 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 46 108 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 91 108 - -
Cec06g0948 587 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Cec06g0948 587 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0948 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0642 Cec-Chr6:7160585 Cec06g0948 Cec-Chr6:13038286 3.10E-32 dispersed
Cec06g0948 Cec-Chr6:13038286 Cec08g1356 Cec-Chr8:25493608 4.90E-27 dispersed
Cec11g0247 Cec-Chr11:2634808 Cec06g0948 Cec-Chr6:13038286 9.20E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1356 . 325 450 CPP Transcription Factor Family AT3G22780 57.9 3.8e-39 160.2
Cec08g1356 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 1.1e-40 165.2
Cec11g0247 . 92 521 CPP Transcription Factor Family AT2G20110 61.6 1.2e-141 500.4
Cec06g0948 . 30 541 CPP Transcription Factor Family AT2G20110 50.6 1.0e-124 444.1
Cec08g1356 . 325 459 CPP Transcription Factor Family AT3G04850 51.4 1.6e-36 151.4
Cec11g0247 . 29 528 CPP Transcription Factor Family AT4G29000 56.9 1.7e-152 536.6
Cec06g0948 . 20 540 CPP Transcription Factor Family AT4G29000 52.8 1.6e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29776 PF03638 TCR 3.10E-12 No_clan Cec TF