Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0948 ATGGATAATTTACCCCCGCTAAATGCTCAAATTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCGTTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGTTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGTTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCAGAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTTGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCACCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGCAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 1764 44.16 MDNLPPLNAQIDSAEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPVVTKASHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHVDHANNLAYIQQAANAAITGAIGSSGYVCLPTSKKRKGPELCFGPVGKDSPLNSIPEFHQANNVMSSGTSTSSPFPVAHVGNGSPAASKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGLAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13038286 13043680 - CePI673135_06g009480.1 Cec06g0948 205685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0948 587 SMART CXC_2 198 239 IPR033467 -
Cec06g0948 587 SMART CXC_2 113 153 IPR033467 -
Cec06g0948 587 PANTHER TESMIN/TSO1-RELATED 45 510 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cec06g0948 587 MobiDBLite consensus disorder prediction 50 81 - -
Cec06g0948 587 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Cec06g0948 587 MobiDBLite consensus disorder prediction 1 23 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 395 424 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 378 394 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 374 438 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 46 108 - -
Cec06g0948 587 MobiDBLite consensus disorder prediction 91 108 - -
Cec06g0948 587 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Cec06g0948 587 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0642 Cec-Chr6:7160585 Cec06g0948 Cec-Chr6:13038286 3.10E-32 dispersed
Cec06g0948 Cec-Chr6:13038286 Cec08g1356 Cec-Chr8:25493608 4.90E-27 dispersed
Cec11g0247 Cec-Chr11:2634808 Cec06g0948 Cec-Chr6:13038286 9.20E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29776 PF03638 TCR 3.10E-12 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0948 - - - 0.0