Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0973 ATGATCCGGTTAAGTTTGATTGTTTTTTTCCTCCTTTCTGTGTTCTTTGTTGTTGAAGCTCAAATTGATTCTCAAGATCCTGAAAATGCTGCTTTTCAACCAAGTCTTGGTTTTGTGATAGGGATTTTGGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTCTATGCAAAGATCTGTCATAGAAGATCTTCTGTTCGTGGAGATGATGTAAATCTTCCTAGACAAATCAGGTCAAGTTCTCGGCTTTCTGGAGTCGATAAGACGGTGATCGAGTCTCTTCCATTCTTTAGATTCTCCACATTGAAAGGGTCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTCCGGTTGTTGCCGAAGTGCAAACATGCATTTCATATTAACTGCATTGATCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGCTCTGAGGACTTGAAGCTCCTTGCTACTTCAAACAGCATGAGGTTCTTATTGAGCAACCTATCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTACAAAGAGAAGAAGAAGAACAACGACAAATACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAGGAGTGATAAGGAAGAGGAAATGTTGATACAAAAGGCTTGTGGTGATGGAGATGAGGACATGAAGAACTTACACAGACACAACCACAAAATTATCGTATCCGATTTCGTTTTCATGAATCGATGGAGCAACGTAAGTTCGTCAGACCTGATGTTCTTGAACAAAGAGATGATGGATGCCATTTCAAGCAGTAGATTCACTTCCTTGGAAACAGATATAGAACAGTCAACGCAGCCAAGATCAATACAAATTGAAGAAATTTTGAAGATCAAGGAGGAGATGGAAATAAAGAGATCATTTGAGAGCAAACTCAACACAATAAACCAAAGCAACTCAGTTCTGGGATTCCCTTCTACATCACAATCTGCTGCAAATCCAAGTCAAACAACAAGAATTACAAGCCCAGATGCAAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTAACGAAGATCTGTATATGAATTTTAACAGAAAAGTTGAAACTGGGGAATCTTCTGATCAGGGAAACAATGTAAAGCAAGAAAGAGTGAGACAAATTTGGTACCCAATTGCTAAAAGAACAGTCCAATGGTTTGCCAATAGAGAAACAAGGTTTCAAACAGCTGACAACAGACAACAAACAGTAGAAAATGTATAA 1299 38.65 MIRLSLIVFFLLSVFFVVEAQIDSQDPENAAFQPSLGFVIGILGVMFLLTFILLVYAKICHRRSSVRGDDVNLPRQIRSSSRLSGVDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLATSNSMRFLLSNLSELKQDSNIELFVQREEEEQRQILHGSSRFSIGRSFRKILRSDKEEEMLIQKACGDGDEDMKNLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMMDAISSSRFTSLETDIEQSTQPRSIQIEEILKIKEEMEIKRSFESKLNTINQSNSVLGFPSTSQSAANPSQTTRITSPDARRSVSEITGISRFGNEDLYMNFNRKVETGESSDQGNNVKQERVRQIWYPIAKRTVQWFANRETRFQTADNRQQTVENV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13719573 13720871 - CePI673135_06g009730.1 Cec06g0973 205710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0973 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Cec06g0973 432 Pfam Ring finger domain 110 153 IPR001841 -
Cec06g0973 432 FunFam RING-H2 finger protein ATL43 86 160 - -
Cec06g0973 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 416 - -
Cec06g0973 432 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cec06g0973 432 MobiDBLite consensus disorder prediction 334 357 - -
Cec06g0973 432 SMART ring_2 111 152 IPR001841 -
Cec06g0973 432 CDD RING-H2_EL5-like 110 153 - -
Cec06g0973 432 SUPERFAMILY RING/U-box 91 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0973 Cec-Chr6:13719573 Cec06g1595 Cec-Chr6:29517781 1.50E-41 dispersed
Cec06g0973 Cec-Chr6:13719573 Cec06g0974 Cec-Chr6:13722114 3.60E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0973 K10664 - csv:105436309 516.538