Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0984 ATGGAGACTGAGTCTAGCATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCAACCTTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGCGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCCTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAGAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCACCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCTGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTCTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTGGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 777 52.9 METESSILNPSPPPSPSSSGSLSTVPDHQPSSSSSAVESNRKRAKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLSSSSSSASSSSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14046733 14047509 + CePI673135_06g009840.1 Cec06g0984 205721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0984 258 MobiDBLite consensus disorder prediction 146 171 - -
Cec06g0984 258 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 MobiDBLite consensus disorder prediction 1 61 - -
Cec06g0984 258 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Cec06g0984 258 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677(InterPro)
Cec06g0984 258 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 MobiDBLite consensus disorder prediction 20 38 - -
Cec06g0984 258 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0984 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 203 IPR051032 -
Cec06g0984 258 MobiDBLite consensus disorder prediction 123 171 - -
Cec06g0984 258 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0984 Cec-Chr6:14046733 Cec11g1573 Cec-Chr11:30021244 1.90E-47 dispersed
Cec10g0252 Cec-Chr10:2843932 Cec06g0984 Cec-Chr6:14046733 7.60E-37 transposed
Cec11g0235 Cec-Chr11:2512522 Cec06g0984 Cec-Chr6:14046733 2.90E-45 wgd
Cec06g0984 Cec-Chr6:14046733 Cec09g0183 Cec-Chr9:1640324 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29779 PF00847 AP2 3.00E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0984 K09286 - csv:101219745 350.517