Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1057 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCGCGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAACAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGATGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACAACAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAGGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCAACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGCCAAGAAGAGACATTTCATATGTGAAAAATTACAGTCTTTTTGCTAAGTTGGCCGAGAAGTACAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGCGCTGCTGCTGCACCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG 2121 44.55 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELADGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTTARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEPRRDISYVKNYSLFAKLAEKYNIGDLILNVGAGGGASVPAGGAAAAPAPPPKEKKEEPKEESDDDMGFSLFG 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17423665 17431887 - CePI673135_06g010570.1 Cec06g1057 205794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1057 706 Coils Coil 167 187 - -
Cec06g1057 706 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cec06g1057 706 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 638 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Cec06g1057 706 MobiDBLite consensus disorder prediction 157 176 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 400 414 - -
Cec06g1057 706 Gene3D - 59 114 - -
Cec06g1057 706 CDD SANT 10 53 IPR001005 -
Cec06g1057 706 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 597 621 - -
Cec06g1057 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cec06g1057 706 Gene3D - 5 58 - -
Cec06g1057 706 CDD SANT_CDC5_II 55 106 IPR047240 -
Cec06g1057 706 MobiDBLite consensus disorder prediction 382 423 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 684 700 - -
Cec06g1057 706 Coils Coil 514 534 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 110 150 - -
Cec06g1057 706 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 672 706 - -
Cec06g1057 706 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cec06g1057 706 MobiDBLite consensus disorder prediction 597 612 - -
Cec06g1057 706 Pfam 60s Acidic ribosomal protein 646 705 - -
Cec06g1057 706 MobiDBLite consensus disorder prediction 213 234 - -
Cec06g1057 706 Pfam pre-mRNA splicing factor component 407 636 IPR021786 -
Cec06g1057 706 SMART sant 58 105 IPR001005 -
Cec06g1057 706 SMART sant 6 55 IPR001005 -
Cec06g1057 706 Pfam Myb-like DNA-binding domain 10 70 - -
Cec06g1057 706 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cec06g1057 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1057 K12860 - - csv:101205030 1193.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1057 Cec-Chr6:17423665 Cec10g0725 Cec-Chr10:10516886 1.30E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1057 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.3 1.8e-296 1015.4
Cec06g1056 . 151 367 MYB-Related Transcription Factor Family AT1G09770 53.2 1.7e-49 194.9
Cec10g0725 . 43 495 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cec10g0725 . 43 495 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cec06g1057 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.3 1.8e-296 1015.4
Cec06g1056 . 151 367 MYB-Related Transcription Factor Family AT1G09770 53.2 1.7e-49 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29782 PF11831 Myb_Cef 1.20E-50 No_clan Cec TF