Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1087 ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATGCAACAATTCCAAACGATGCAGCCAAACGGTGACGTTTTTGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCCACAACCGTGCATCAAGTCCACGGCTTCAACCCGTTTTCTAATCCGACTATCCTAGACCACCACGACTCGTTTATCTCGCCACTGCAACCGCCAGCCTCCTATGGCAGTTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTGGTTGTGCTCCATTTGAACTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCGTCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACGTTGATAGCCGATGTAAATCTGCTGCCGACGGAGCTGGACGAGCTATCGGTGGATTTCGATGCGTCCGACGAGGACGGGAAGTCTGTGATCAAAGCCTCGTTTTGTTGTGAGGACAGGTCAGATCTTTTGCCACAAATCATCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCAGAGATCACGACGCTCGGCGGCCGCGTAAGAAACGTATTGTTCATCACCAGCGATGATGACTCCTTCAACGACCAACAAGATCAGGCTCAACAACACCAACACCACCAATACAGCATCAGTTCCATTCAAGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGGTCTTTCTAG 951 46.58 MKEEGECFEEQLVMQQFQTMQPNGDVFGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDSFISPLQPPASYGSFFNRRNASSLQFPPYDNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVNLLPTELDELSVDFDASDEDGKSVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEITTLGGRVRNVLFITSDDDSFNDQQDQAQQHQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20016543 20017648 + CePI673135_06g010870.1 Cec06g1087 205824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1087 316 SMART finulus 125 174 IPR011598 GO:0046983(InterPro)
Cec06g1087 316 Pfam Helix-loop-helix DNA-binding domain 122 169 IPR011598 GO:0046983(InterPro)
Cec06g1087 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983(InterPro)
Cec06g1087 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 174 IPR036638 GO:0046983(InterPro)
Cec06g1087 316 Gene3D - 114 174 IPR036638 GO:0046983(InterPro)
Cec06g1087 316 FunFam transcription factor bHLH30 114 177 - -
Cec06g1087 316 PANTHER TRANSCRIPTION FACTOR BHLH30 102 304 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1087 316 CDD bHLH_AtAIG1_like 114 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2529 Cec-Chr5:36319422 Cec06g1087 Cec-Chr6:20016543 6.80E-72 dispersed
Cec06g1087 Cec-Chr6:20016543 Cec10g1381 Cec-Chr10:28099448 3.90E-39 dispersed
Cec06g1087 Cec-Chr6:20016543 Cec03g0632 Cec-Chr3:6773526 2.10E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29783 PF00010 HLH 2.00E-12 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1087 - - - 0.0