Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1171 ATGGATCACAATCACTGCAATGGAAACTCTGATTCTCATATCAAAATACCAAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCAATTTCAGGGAAAACTTTTGAGACCATAGATCCGAGAACCGAGGAGGTTATAACGACGGTCGCCGCTGGGGACAAACAAGACGTTGATTTGGCCGTGAAAGCCGCCCGTGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGCGCCGAGAGGGGCAGGATAATGATGAAACTAGCGGAATTGATAGATGAACACATGGAGGAATTAGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTAATGGGAAAGATGGTAGATATACCGGGGGCTGCAAATACGCTACGGTACTACGCAGGAGCAGCGGATAAATTCCACGGCGAAGTATTGAAAATGGCTAAACCGCTTCACGGTTACACGTTACTTGAGCCTATTGGAGTGGTGGGTCACATCATACCGTGGAATTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCGGCGTTAGCTGCCGGCTGCACCATGATCGTCAAACCGGCCGAACAAACCCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAATTGGCTGGTATACCAGATGGAGTTCTGAACGTGGTGACTGGATATGGACCGACGGCGGGGTCAGGCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACGGGATCAACTAAGGTGGGAAGGCTGGTAATGCAGGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTGGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCAGATCTGGACAAAGCAGTTGATCTTGCTCTCCTAGCTATTTTTTATAACAAGGGGGAAATTTGCGTGGCTGGCTCCCGGGTTTTGGTTCAAGAAGGGATATACGACGAATTCGTGAAAAAGATTACTGAAAAGGTCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCCCAGGTGGACAAAAAGCAAATGGATAAAATTCTGAAATACATAGAACACGGTAAAAAGGAAGGGGCAACATTGGTTACTGGCGGCAAGCGTATAGGCGAAGTGGGGTATTACGTCGAGCCCACAATCTTCACAAATGTCAAGGAAGACTCACTAATTGCCCAGGACGAAATATTCGGCCCCGTCCTCTCAGTCATAAAATTCAAGACAATTGAAGACGGAATAAGGAGTGCAAACAACACCAAGTACGGGCTAGCAGCTGGGATAGTGACGAACAGCTTAGACATAGCGAACACAGTGTCGAGGTCGATTCGAGCTGGTACGATTTGGATAAATTGTTACTTCGCTTTTGACCCAAGTTGCCCATTTGGCGGGTACAAGGCCAGTGGATTCGGAAGAGACTCTGGAATGCACGCTATCCAAAAGTATCTTCAAACTAAATCTGTTGTCATTCCTTTGGTTAACACTCCTTGGCTTTGA 1509 47.58 MDHNHCNGNSDSHIKIPKIKFTKLFINGQFVDSISGKTFETIDPRTEEVITTVAAGDKQDVDLAVKAAREAFDHGPWPRMSGAERGRIMMKLAELIDEHMEELAALDTIDAGKSFLMGKMVDIPGAANTLRYYAGAADKFHGEVLKMAKPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSGIASHMDIDKVSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLVFDDADLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKVKSWVVGDPFDPKVKYGPQVDKKQMDKILKYIEHGKKEGATLVTGGKRIGEVGYYVEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNSLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKASGFGRDSGMHAIQKYLQTKSVVIPLVNTPWL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23663262 23666919 + CePI673135_06g011710.1 Cec06g1171 205908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1171 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491(InterPro)
Cec06g1171 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491(InterPro)
Cec06g1171 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620(InterPro)
Cec06g1171 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491(InterPro)
Cec06g1171 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491(InterPro)
Cec06g1171 502 FunFam Aldehyde dehydrogenase, putative 464 490 - -
Cec06g1171 502 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 294 - -
Cec06g1171 502 Pfam Aldehyde dehydrogenase family 30 492 IPR015590 GO:0016491(InterPro)
Cec06g1171 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 22 494 - GO:0004029(PANTHER)
Cec06g1171 502 FunFam Aldehyde dehydrogenase3 272 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1171 K12355 - - csv:101219029 919.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1171 Cec-Chr6:23663262 Cec06g1889 Cec-Chr6:32192958 7.50E-162 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1171 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Cec02g1743 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cec06g1889 . 71 555 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cec06g1889 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 3.5e-250 860.9
Cec02g1743 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cec06g1171 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.5e-160 563.1
Cec02g1743 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cec06g1889 . 50 399 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cec06g1171 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.8e-103 372.1
Cec11g1632 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 9.1e-182 633.6
Cec11g1633 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 4.0e-177 618.2
Cec11g1632 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 2.6e-176 615.1
Cec11g1633 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.5 3.8e-175 611.3
Cec02g2438 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 6.2e-117 417.9
Cec07g0979 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 5.2e-184 641.0
Cec02g2438 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.9e-157 552.7
Cec02g1968 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 6.8e-214 740.3
Cec09g1759 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cec04g1524 . 249 683 Aldehyde Dehydrogenase Gene Family AT2G14170 68.0 1.5e-180 629.8
Cec06g1867 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 2.5e-250 861.3
Cec06g1867 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-252 867.5
Cec02g1787 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.2e-269 922.5
Cec01g1535 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 1.7e-260 895.2
Cec06g0463 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 3.5e-275 944.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003336 2 1 7 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 49