Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1176 ATGAGTTCGCCAAAAATTGGTCAAAATGTAAGCTTTAGTGCTTCGAGGCCATTTAGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGGCGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCTAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCAAGCTTCGTTCCGCCGCTTGTATACGCGGTGTTTGGAAGCTCAAAGCATCTGGCGGTTGGAACGGTGGCGGCTTGTTCGTTGCTGATATCGGAAATCATTGGAGAAGTGGCTTCGCCAGAAGAAGAACCCACATTGTACCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATGATGCAGGCTGCGTTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTGAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCTGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCAATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAACATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCAATTCTTGAACTTCGACTCCAAATATCTATCAGCTGTAGTACAAGCTGGCTTGATCACTGGCCTTGTCGCTTTGGCTGAAGGAATAGCAATTGGTCGGAGCTTTGCAATAATGAAAAATGAACAAATTGATGGGAATAAGGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCGCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTGCTGCCATTATCATGTCCGCCATGCTTGGTCTCATCAAATATGATGAAATGTATCATCTTCTCAAAGTCGACAAATTCGATTTCTGCATTTGTATGGCAGCTTTCTTGGGTGTTTCCTTCTTAAGCATGGATGTCGGAATCATGCTTTCGGTGGGACTTGCTTTGTTGAGAGCTCTTCTTTACATGGCAAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCTAGTCGACTCCAAAGATGGATCCGTCGAACATGTACTCTTAGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCATAGATCATTACAAGCAAACGGAACTCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATTGCTTCGGAATTCACAGACACGATCGGGAAAGAGAACATCTATTTGTCGGTAGACGAAGGAGTGGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAGAAAACAGAAACAAATGATCGAAGTTCGAACATGACGACAACGGAGCAACAAGTTTAA 1947 42.99 MSSPKIGQNVSFSASRPFRHRLKSDMKETFFPDDPFRQFRNERGAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGMMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIQFLNFDSKYLSAVVQAGLITGLVALAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALAAIIMSAMLGLIKYDEMYHLLKVDKFDFCICMAAFLGVSFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPIYYANSNYIRERIFRWVRDELVDSKDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLQANGTQMGIVNPRIVVMEKMIASEFTDTIGKENIYLSVDEGVERCRDLVPKLKKTETNDRSSNMTTTEQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23912638 23915603 + CePI673135_06g011760.1 Cec06g1176 205913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1176 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cec06g1176 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cec06g1176 648 FunFam Sulfate transporter 31 482 624 - -
Cec06g1176 648 Pfam STAS domain 503 617 IPR002645 -
Cec06g1176 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Cec06g1176 648 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g1176 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Cec06g1176 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Cec06g1176 648 PANTHER SULFATE TRANSPORTER 45 623 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g1176 648 Gene3D STAS domain 482 625 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0577 Cec-Chr5:4717700 Cec06g1176 Cec-Chr6:23912638 1.50E-199 dispersed
Cec06g1176 Cec-Chr6:23912638 Cec09g0705 Cec-Chr9:6255367 2.80E-201 dispersed
Cec06g1176 Cec-Chr6:23912638 Cec06g1177 Cec-Chr6:23942965 0.00E+00 tandem
Cec06g1176 Cec-Chr6:23912638 Cec09g0222 Cec-Chr9:1917256 2.00E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1176 K17471 - csv:116402148 1148.27