Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1179 ATGAATCCTAAATCCCATTTCAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGCCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTGTTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCGTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGAGTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCCGGCAGCGGTCGACTGGGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCGTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCTTCGCCTCCGTCACCGGCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCACCGCTCTCTCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCTTCTTCCCCATCTACACCGTCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACAATCCGACGGCTCCTCCTACGTCCGAGCCCTCACCACCATTGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACATGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACATCATCACCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCACCGCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACCAACACCTTCATCTCCAATTCACTATAACCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCCCTAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCGCCACCACCCTTCTATTAA 2421 55.47 MNPKSHFNPLFHFSLLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPRQRSTGQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPAGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHNPTAPPTSEPSPPLPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTSSPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPLVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23995130 23997550 + CePI673135_06g011790.1 Cec06g1179 205916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1179 806 SUPERFAMILY L domain-like 87 360 - -
Cec06g1179 806 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 513 IPR051582 -
Cec06g1179 806 Pfam Leucine rich repeat 290 347 IPR001611 GO:0005515(InterPro)
Cec06g1179 806 Pfam Leucine Rich Repeat 173 190 IPR001611 GO:0005515(InterPro)
Cec06g1179 806 FunFam Leucine-rich repeat extensin-like protein 1 79 240 - -
Cec06g1179 806 Gene3D Ribonuclease Inhibitor 78 240 IPR032675 -
Cec06g1179 806 Gene3D Ribonuclease Inhibitor 241 373 IPR032675 -
Cec06g1179 806 MobiDBLite consensus disorder prediction 398 785 - -
Cec06g1179 806 MobiDBLite consensus disorder prediction 408 785 - -
Cec06g1179 806 FunFam Leucine-rich repeat extensin-like protein 5 241 380 - -
Cec06g1179 806 Pfam Leucine rich repeat N-terminal domain 81 113 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0364 Cec-Chr6:4166402 Cec06g1179 Cec-Chr6:23995130 2.80E-40 dispersed
Cec06g0365 Cec-Chr6:4170135 Cec06g1179 Cec-Chr6:23995130 4.60E-39 dispersed
Cec06g1179 Cec-Chr6:23995130 Cec11g0208 Cec-Chr11:2269489 6.50E-14 dispersed
Cec05g0578 Cec-Chr5:4728538 Cec06g1179 Cec-Chr6:23995130 8.20E-36 transposed
Cec05g2162 Cec-Chr5:33235578 Cec06g1179 Cec-Chr6:23995130 5.00E-31 transposed
Cec07g0286 Cec-Chr7:2825988 Cec06g1179 Cec-Chr6:23995130 9.10E-33 transposed
Cec11g0262 Cec-Chr11:2811538 Cec06g1179 Cec-Chr6:23995130 3.70E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1179 - - - 0.0