Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1234 ATGCCTTCAAGAATAGCCATGTTAGGATCTTGTACTTGTGGTACTTCTTCACCTTATGACATTTTCAGTGAAGATGGAAGAAGTGAAGATGCTCCTACGACTAGAGGCCGAGTGAAGATGACGTGCTTCCTACTATGTGCTGCTGGCACAAAGATGGAAGATCGGGGTGGAGCTGACAGACGACGTGCTTGCTACTATGTGCTGCTGGCACGAAGATGGAAGATAAGGGTGGAGGCTGATGGTTGTGAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGTTTTTGGGCAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGACAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCAGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTAATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1236 43.37 MPSRIAMLGSCTCGTSSPYDIFSEDGRSEDAPTTRGRVKMTCFLLCAAGTKMEDRGGADRRRACYYVLLARRWKIRVEADGCETPLRICPRFQAVKASGFWARRYPMKGEVQLESSIGQNPSDSDPLLDNQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLNGCYTPPKLEPEHEQHLKMLQLL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25322286 25330761 + CePI673135_06g012340.1 Cec06g1234 205971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1234 411 CDD RING_CH-C4HC3_MARCH 156 207 - -
Cec06g1234 411 MobiDBLite consensus disorder prediction 113 137 - -
Cec06g1234 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 220 IPR013083 -
Cec06g1234 411 MobiDBLite consensus disorder prediction 113 148 - -
Cec06g1234 411 Pfam RING-variant domain 156 206 IPR011016 GO:0008270(InterPro)
Cec06g1234 411 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 117 410 - -
Cec06g1234 411 SUPERFAMILY RING/U-box 154 211 - -
Cec06g1234 411 ProSiteProfiles Zinc finger RING-CH-type profile. 148 213 IPR011016 GO:0008270(InterPro)
Cec06g1234 411 SMART ringv_2 155 207 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1606 Cec-Chr4:35444693 Cec06g1234 Cec-Chr6:25322286 3.30E-54 dispersed
Cec06g1234 Cec-Chr6:25322286 Cec07g1583 Cec-Chr7:31335696 3.60E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1234 - - - 0.0