Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1284 ATGGCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTTGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAAAGTTATTACGACGACCAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCACAATAACAACGACAACGACAATGAAGATTCTCCTATGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTCGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTGCTGAGCCATTCGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 46.7 MAKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNKVITTTKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNNDNDNEDSPMMAVVASDHQSPMAVAEVAEIPSESDEEEKMLALQMVEELLDINSDPAEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26016939 26017719 - CePI673135_06g012840.1 Cec06g1284 206021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1284 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cec06g1284 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cec06g1284 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Cec06g1284 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1284 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1284 Cec-Chr6:26016939 Cec08g1402 Cec-Chr8:25834895 6.30E-25 dispersed
Cec11g0313 Cec-Chr11:3367401 Cec06g1284 Cec-Chr6:26016939 4.50E-59 wgd
Cec05g1866 Cec-Chr5:30743518 Cec06g1284 Cec-Chr6:26016939 4.70E-56 wgd
Cec06g1284 Cec-Chr6:26016939 Cec07g1388 Cec-Chr7:29477260 2.50E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29789 PF00847 AP2 7.20E-12 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1284 - - - 0.0