Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g1284 | ATGGCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTTGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAAAGTTATTACGACGACCAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCACAATAACAACGACAACGACAATGAAGATTCTCCTATGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTCGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTGCTGAGCCATTCGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG | 651 | 46.7 | MAKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNKVITTTKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNNDNDNEDSPMMAVVASDHQSPMAVAEVAEIPSESDEEEKMLALQMVEELLDINSDPAEPFEIQQGKDINYL | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26016939 | 26017719 | - | CePI673135_06g012840.1 | Cec06g1284 | 206021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g1284 | 216 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) | |
Cec06g1284 | 216 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cec06g1284 | 216 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 135 | IPR050913 | - | |
Cec06g1284 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1284 | 216 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1284 | Cec-Chr6:26016939 | Cec08g1402 | Cec-Chr8:25834895 | 6.30E-25 | dispersed | |
Cec11g0313 | Cec-Chr11:3367401 | Cec06g1284 | Cec-Chr6:26016939 | 4.50E-59 | wgd | |
Cec05g1866 | Cec-Chr5:30743518 | Cec06g1284 | Cec-Chr6:26016939 | 4.70E-56 | wgd | |
Cec06g1284 | Cec-Chr6:26016939 | Cec07g1388 | Cec-Chr7:29477260 | 2.50E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29789 | PF00847 | AP2 | 7.20E-12 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g1284 | - | - | - | 0.0 |