Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1293 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTTCAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 579 43.18 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNFNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26175656 26178848 - CePI673135_06g012930.1 Cec06g1293 206030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1293 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cec06g1293 192 CDD HMG-box_SF 120 156 - -
Cec06g1293 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cec06g1293 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cec06g1293 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cec06g1293 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1293 K25796 - - csv:101215951 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2367 Cec-Chr2:40915706 Cec06g1293 Cec-Chr6:26175656 2.40E-46 dispersed
Cec05g2609 Cec-Chr5:36913110 Cec06g1293 Cec-Chr6:26175656 5.30E-30 dispersed
Cec05g2773 Cec-Chr5:38145196 Cec06g1293 Cec-Chr6:26175656 1.40E-31 dispersed
Cec06g1293 Cec-Chr6:26175656 Cec10g0303 Cec-Chr10:3720703 1.50E-38 dispersed
Cec11g0318 Cec-Chr11:3430874 Cec06g1293 Cec-Chr6:26175656 1.00E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2590 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec05g2609 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec01g0381 . 95 255 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cec01g0381 . 51 245 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 2.0e-43 172.6
Cec06g1293 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.7e-42 168.3
Cec10g0303 . 18 189 C2C2-YABBY Transcription Factor Family AT1G08465 53.5 1.3e-39 159.8
Cec01g0381 . 62 254 C2C2-YABBY Transcription Factor Family AT4G00180 55.0 1.2e-49 193.4
Cec10g0303 . 29 189 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 4.1e-37 151.8
Cec05g2773 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Cec06g1293 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 70.4 2.9e-62 235.0
Cec11g0318 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 70.7 5.5e-61 230.7
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cec01g0381 . 53 217 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29790 PF04690 YABBY 1.10E-69 CL0114 Cec TF