Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec06g1293 | ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTTCAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA | 579 | 43.18 | MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNFNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26175656 | 26178848 | - | CePI673135_06g012930.1 | Cec06g1293 | 206030 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec06g1293 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 10 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Cec06g1293 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
| Cec06g1293 | 192 | Pfam | YABBY protein | 9 | 166 | IPR006780 | GO:0007275(InterPro) | |
| Cec06g1293 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
| Cec06g1293 | 192 | Gene3D | High mobility group box domain | 105 | 161 | IPR036910 | - | |
| Cec06g1293 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g2367 | Cec-Chr2:40915706 | Cec06g1293 | Cec-Chr6:26175656 | 2.40E-46 | dispersed | |
| Cec05g2609 | Cec-Chr5:36913110 | Cec06g1293 | Cec-Chr6:26175656 | 5.30E-30 | dispersed | |
| Cec05g2773 | Cec-Chr5:38145196 | Cec06g1293 | Cec-Chr6:26175656 | 1.40E-31 | dispersed | |
| Cec06g1293 | Cec-Chr6:26175656 | Cec10g0303 | Cec-Chr10:3720703 | 1.50E-38 | dispersed | |
| Cec11g0318 | Cec-Chr11:3430874 | Cec06g1293 | Cec-Chr6:26175656 | 1.00E-71 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29790 | PF04690 | YABBY | 1.10E-69 | CL0114 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec06g1293 | K25796 | - | csv:101215951 | 363.229 |