Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1311 ATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTGCTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGGTTCTGCTACTGAAACAAGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGCTGAGCTGGCCTCTGGTAATGCCAATCCATCAGAATCAGATAACAAAACAGCAAGCAAACTGCTTCAGTTCTCTTATCATGAGCTCAAGGCAGCAACAGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGAATTACGGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCTACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTTCAATAGGATCAAGATTGCCCTTGGAGCGGCGAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCTGTAATCTATAGAGATTTTAAGACATCCAATATCTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGGCATCTGACATCGAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTGGATCCCCGCTTGGAATTCAACTATTCCATAAAAGGGGTGCAAAAGGTCTCGCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAAGAACCATAGGTAGAGTAGGAGAGGAGATATTGGATCTTCCTTTGTGGATCTGCATTACCTTGTATGTTACCACCGTTCTTTTTCGATCAGCAATCAAGAATATTAACTTTATACAAAGATGCTTCTAA 1398 43.71 MEKRCGCWAVLTRAVSGVCKSSASRDSPNTIPRTSLVYGSATETRYLNASNRDLCTLNEAELASGNANPSESDNKTASKLLQFSYHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDLRLLVYEFMSRGSLENHLFRRTIPLPWFNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVRTIGRVGEEILDLPLWICITLYVTTVLFRSAIKNINFIQRCF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26359186 26362665 - CePI673135_06g013110.1 Cec06g1311 206048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1311 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1311 465 CDD STKc_IRAK 101 377 - -
Cec06g1311 465 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524(InterPro)
Cec06g1311 465 SUPERFAMILY Protein kinase-like (PK-like) 78 385 IPR011009 -
Cec06g1311 465 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
Cec06g1311 465 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1311 465 Gene3D Phosphorylase Kinase; domain 1 69 180 - -
Cec06g1311 465 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Cec06g1311 465 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1311 465 FunFam Serine/threonine-protein kinase BIK1 62 180 - -
Cec06g1311 465 PANTHER OS01G0588500 PROTEIN-RELATED 70 378 IPR050823 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2690 Cec-Chr5:37472925 Cec06g1311 Cec-Chr6:26359186 4.80E-137 dispersed
Cec06g1311 Cec-Chr6:26359186 Cec09g1949 Cec-Chr9:36510395 5.70E-140 dispersed
Cec06g0236 Cec-Chr6:2515769 Cec06g1311 Cec-Chr6:26359186 4.50E-23 transposed
Cec11g0333 Cec-Chr11:3613163 Cec06g1311 Cec-Chr6:26359186 3.40E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72087 PF00069 Pkinase 1.20E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1311 - - - 0.0