Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1400 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAGTAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATTGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATTCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGGGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTAATCATTTCTCTCTAGGATCATGTATTTGA 2094 43.7 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAISNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSTYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVIQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQGYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKREQNEIPEMNGEFGFNHFSLGSCI 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27465332 27468889 + CePI673135_06g014000.1 Cec06g1400 206137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1400 697 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Cec06g1400 697 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cec06g1400 697 CDD REC_typeB_ARR-like 26 140 - -
Cec06g1400 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 373 IPR045279 GO:0009736(InterPro)
Cec06g1400 697 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cec06g1400 697 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cec06g1400 697 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cec06g1400 697 FunFam Two-component response regulator 207 270 - -
Cec06g1400 697 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cec06g1400 697 MobiDBLite consensus disorder prediction 157 178 - -
Cec06g1400 697 Gene3D - 24 182 - -
Cec06g1400 697 PIRSF RR_ARR_type-B 1 697 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cec06g1400 697 Gene3D - 207 270 - -
Cec06g1400 697 MobiDBLite consensus disorder prediction 147 208 - -
Cec06g1400 697 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cec06g1400 697 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0481 Cec-Chr6:5418126 Cec06g1400 Cec-Chr6:27465332 7.20E-81 dispersed
Cec06g1400 Cec-Chr6:27465332 Cec08g1802 Cec-Chr8:29056137 5.00E-71 dispersed
Cec01g0007 Cec-Chr1:83529 Cec06g1400 Cec-Chr6:27465332 1.40E-18 transposed
Cec01g1751 Cec-Chr1:32095505 Cec06g1400 Cec-Chr6:27465332 3.00E-16 transposed
Cec04g1013 Cec-Chr4:29723345 Cec06g1400 Cec-Chr6:27465332 7.20E-18 transposed
Cec11g0360 Cec-Chr11:3814227 Cec06g1400 Cec-Chr6:27465332 1.10E-156 transposed
Cec05g1819 Cec-Chr5:30140620 Cec06g1400 Cec-Chr6:27465332 3.50E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29792 PF00072 Response_reg 1.60E-25 CL0304 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1400 K14491 - csv:101213687 1249.96