Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g1400 | ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAGTAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATTGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATTCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGGGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTAATCATTTCTCTCTAGGATCATGTATTTGA | 2094 | 43.7 | MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAISNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSTYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVIQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQGYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKREQNEIPEMNGEFGFNHFSLGSCI | 697 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27465332 | 27468889 | + | CePI673135_06g014000.1 | Cec06g1400 | 206137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g1400 | 697 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 264 | IPR006447 | GO:0003677(InterPro) | |
Cec06g1400 | 697 | SUPERFAMILY | Homeodomain-like | 209 | 268 | IPR009057 | - | |
Cec06g1400 | 697 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cec06g1400 | 697 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 24 | 373 | IPR045279 | GO:0009736(InterPro) | |
Cec06g1400 | 697 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Cec06g1400 | 697 | SUPERFAMILY | CheY-like | 23 | 148 | IPR011006 | - | |
Cec06g1400 | 697 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 267 | IPR017930 | - | |
Cec06g1400 | 697 | FunFam | Two-component response regulator | 207 | 270 | - | - | |
Cec06g1400 | 697 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) | |
Cec06g1400 | 697 | MobiDBLite | consensus disorder prediction | 157 | 178 | - | - | |
Cec06g1400 | 697 | Gene3D | - | 24 | 182 | - | - | |
Cec06g1400 | 697 | PIRSF | RR_ARR_type-B | 1 | 697 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cec06g1400 | 697 | Gene3D | - | 207 | 270 | - | - | |
Cec06g1400 | 697 | MobiDBLite | consensus disorder prediction | 147 | 208 | - | - | |
Cec06g1400 | 697 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Cec06g1400 | 697 | Pfam | Myb-like DNA-binding domain | 213 | 263 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g0481 | Cec-Chr6:5418126 | Cec06g1400 | Cec-Chr6:27465332 | 7.20E-81 | dispersed | |
Cec06g1400 | Cec-Chr6:27465332 | Cec08g1802 | Cec-Chr8:29056137 | 5.00E-71 | dispersed | |
Cec01g0007 | Cec-Chr1:83529 | Cec06g1400 | Cec-Chr6:27465332 | 1.40E-18 | transposed | |
Cec01g1751 | Cec-Chr1:32095505 | Cec06g1400 | Cec-Chr6:27465332 | 3.00E-16 | transposed | |
Cec04g1013 | Cec-Chr4:29723345 | Cec06g1400 | Cec-Chr6:27465332 | 7.20E-18 | transposed | |
Cec11g0360 | Cec-Chr11:3814227 | Cec06g1400 | Cec-Chr6:27465332 | 1.10E-156 | transposed | |
Cec05g1819 | Cec-Chr5:30140620 | Cec06g1400 | Cec-Chr6:27465332 | 3.50E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29792 | PF00072 | Response_reg | 1.60E-25 | CL0304 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g1400 | K14491 | - | csv:101213687 | 1249.96 |