Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1407 ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCTCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCATTTCGATCCCGCCTCCGCCGTTTCCCACGACGACTTTCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCGTCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAACGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCCATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTGATTGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA 1269 55.56 MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPASAVSHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGNGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVIGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27561354 27564358 + CePI673135_06g014070.1 Cec06g1407 206144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1407 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 364 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cec06g1407 422 MobiDBLite consensus disorder prediction 295 330 - -
Cec06g1407 422 SMART finulus 223 272 IPR011598 GO:0046983(InterPro)
Cec06g1407 422 MobiDBLite consensus disorder prediction 381 422 - -
Cec06g1407 422 MobiDBLite consensus disorder prediction 173 212 - -
Cec06g1407 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983(InterPro)
Cec06g1407 422 MobiDBLite consensus disorder prediction 74 90 - -
Cec06g1407 422 Gene3D - 211 274 IPR036638 GO:0046983(InterPro)
Cec06g1407 422 MobiDBLite consensus disorder prediction 304 330 - -
Cec06g1407 422 MobiDBLite consensus disorder prediction 28 54 - -
Cec06g1407 422 MobiDBLite consensus disorder prediction 74 106 - -
Cec06g1407 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 277 IPR036638 GO:0046983(InterPro)
Cec06g1407 422 FunFam Transcription factor bHLH66 214 279 - -
Cec06g1407 422 MobiDBLite consensus disorder prediction 167 220 - -
Cec06g1407 422 Pfam Helix-loop-helix DNA-binding domain 222 267 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1407 Cec-Chr6:27561354 Cec09g0720 Cec-Chr9:6507935 1.50E-46 dispersed
Cec06g1407 Cec-Chr6:27561354 Cec02g1786 Cec-Chr2:35711070 2.90E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29793 PF00010 HLH 1.60E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1407 - - - 0.0