Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1412 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCCAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGTGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCAGAAGTTATTGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCAAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAATGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTTTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGTATGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTCCGGCCGGCTCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 48.57 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQVCGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27645482 27646774 - CePI673135_06g014120.1 Cec06g1412 206149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1412 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1412 430 CDD CIPK_C 301 416 - -
Cec06g1412 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Cec06g1412 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1412 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Cec06g1412 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1412 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Cec06g1412 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cec06g1412 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cec06g1412 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec06g1412 430 CDD STKc_SnRK3 16 270 - -
Cec06g1412 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cec06g1412 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Cec06g1412 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Cec06g1412 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Cec06g1412 430 Coils Coil 280 300 - -
Cec06g1412 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cec06g1412 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1785 Cec-Chr2:35679163 Cec06g1412 Cec-Chr6:27645482 1.30E-210 dispersed
Cec04g0775 Cec-Chr4:27305405 Cec06g1412 Cec-Chr6:27645482 2.80E-147 dispersed
Cec04g2088 Cec-Chr4:38837804 Cec06g1412 Cec-Chr6:27645482 8.60E-144 dispersed
Cec05g0553 Cec-Chr5:4456209 Cec06g1412 Cec-Chr6:27645482 1.40E-92 dispersed
Cec06g0422 Cec-Chr6:4751714 Cec06g1412 Cec-Chr6:27645482 1.40E-103 dispersed
Cec06g0664 Cec-Chr6:7473477 Cec06g1412 Cec-Chr6:27645482 8.30E-101 dispersed
Cec06g1289 Cec-Chr6:26120882 Cec06g1412 Cec-Chr6:27645482 8.00E-111 dispersed
Cec06g1412 Cec-Chr6:27645482 Cec10g1304 Cec-Chr10:27267368 1.30E-133 dispersed
Cec05g1809 Cec-Chr5:29949201 Cec06g1412 Cec-Chr6:27645482 5.50E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72090 PF00069 Pkinase 1.50E-73 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1412 - - - 0.0