Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1425 ATGGCGGAGCGGGAAGGCTTCGAAACTGACCAACTCGGAAGCTCCAAGGCGGCTACTGCCGGCCAAGAGGATGATGAAGAAGACATGGAAGATTCCGAGGATGAATCAGAGGTGGAATTGGAAGATGGAGGAGGAGGAGGAGGGAGTGAGTTGCAACCGACTGAGTTGAGAACCGGTTCGTGGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCGAATCAATCCTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCGCAATGAGCCAAAGGCTGTTGAAGCAACCCAGATAGATAAGGTTCAAGAACAAAATCAGCTTCAGGTGTCAACATTTAAGGGACCTGGTTCGGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGTCAGAAAAATTCCTCCAACCATAAAACTGCATCATCTGTTCCGAATGTAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATTGAATGTTGTGATCACTCAGGCCATAGAACAGGGACTGTTTACAAGAGCGAACATAGCCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCAAAAGAACCTGTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAGCACTCAAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGATGGACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAATTCAGGCACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGATGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCGGTCCGTAAACATATCGAATCAGCAGTAGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCAAAGAAACGACATGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCCATGAGCAATACGCAACCGAAGAAAACCGACGTGGTTGAGAGCCAAATCTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCCTGCTGA 1542 46.63 MAEREGFETDQLGSSKAATAGQEDDEEDMEDSEDESEVELEDGGGGGGSELQPTELRTGSWVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQAPSSRNEPKAVEATQIDKVQEQNQLQVSTFKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHRTGTVYKSEHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTPSKEPVRETAIVLERKRQHSSDSDGNDEFKIKDENGDGPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 27788348 27791520 + CePI673135_06g014250.1 Cec06g1425 206162
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1425 513 Gene3D WRKY domain 359 435 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 Gene3D WRKY domain 185 261 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 SUPERFAMILY WRKY DNA-binding domain 370 434 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 ProSiteProfiles WRKY domain profile. 202 260 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 Pfam WRKY DNA -binding domain 203 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 FunFam WRKY transcription factor 361 435 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 167 182 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 310 342 - -
Cec06g1425 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 116 454 IPR044810 GO:0003700(InterPro)
Cec06g1425 513 MobiDBLite consensus disorder prediction 183 200 - -
Cec06g1425 513 SMART WRKY_cls 374 433 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 SMART WRKY_cls 201 259 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 MobiDBLite consensus disorder prediction 124 166 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 310 361 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 23 41 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 53 107 - -
Cec06g1425 513 MobiDBLite consensus disorder prediction 1 222 - -
Cec06g1425 513 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1425 513 SUPERFAMILY WRKY DNA-binding domain 199 260 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1425 Cec-Chr6:27788348 Cec11g0476 Cec-Chr11:5119750 8.20E-39 dispersed
Cec06g1425 Cec-Chr6:27788348 Cec05g2623 Cec-Chr5:37015293 6.10E-42 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29794 PF03106 WRKY 6.60E-24 CL0274 Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1425 - - - 0.0