Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1438 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAAATTCTAAAAATTAAACGGGACATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACACGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAAGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATATGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTACCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTTGAGGCCATCTGTCAATTTTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCACGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTATTAATATCAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGTGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGTGCAGACGTATCTGGTATCCAGCCTGCTGGACGTGGCCAGGCATCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTCTTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGACAGCCACAGTCCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGTGTGGAAGAACTCATGTCACCAGCTTACCACCCCGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACACTGAAACTGGATGTTTGCTATATGCTTCGGTGCTTGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGAAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTGTTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA 2427 46.11 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATINIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPAGRGQASLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGAGASAGGSTTRPVNFGHGLEPSGQVHKPITTATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDTETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEDCRSLAY 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27861612 27868010 - CePI673135_06g014380.1 Cec06g1438 206175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1438 808 MobiDBLite consensus disorder prediction 174 194 - -
Cec06g1438 808 MobiDBLite consensus disorder prediction 113 130 - -
Cec06g1438 808 Gene3D - 636 802 - -
Cec06g1438 808 Gene3D - 210 445 - -
Cec06g1438 808 MobiDBLite consensus disorder prediction 1 43 - -
Cec06g1438 808 SMART ma3_7 643 755 IPR003891 -
Cec06g1438 808 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Cec06g1438 808 MobiDBLite consensus disorder prediction 25 43 - -
Cec06g1438 808 MobiDBLite consensus disorder prediction 112 204 - -
Cec06g1438 808 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Cec06g1438 808 ProSiteProfiles MI domain profile. 642 764 IPR003891 -
Cec06g1438 808 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cec06g1438 808 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cec06g1438 808 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 57 806 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cec06g1438 808 Pfam MA3 domain 643 755 IPR003891 -
Cec06g1438 808 SUPERFAMILY ARM repeat 638 797 IPR016024 -
Cec06g1438 808 MobiDBLite consensus disorder prediction 481 502 - -
Cec06g1438 808 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0327 Cec-Chr3:3712001 Cec06g1438 Cec-Chr6:27861612 7.20E-09 transposed
Cec05g0339 Cec-Chr5:2811979 Cec06g1438 Cec-Chr6:27861612 3.30E-53 transposed
Cec06g0873 Cec-Chr6:11147985 Cec06g1438 Cec-Chr6:27861612 2.30E-54 transposed
Cec05g1792 Cec-Chr5:29808294 Cec06g1438 Cec-Chr6:27861612 1.20E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1438 K03260 - csv:101207520 1389.79