Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1453 ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAGACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGTTTATCTTGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCATCGGAACAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTGTCTTTGCCTGTGAGACCTCAGGATCTTATTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGGTATCGCATTACGATTTCGTGGATTAG 1071 48.55 MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSEQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTVFACETSGSYCYGEAEDAIFSDFNSFIPPPVSHYDFVD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28022843 28027180 + CePI673135_06g014530.1 Cec06g1453 206190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1453 356 MobiDBLite consensus disorder prediction 1 21 - -
Cec06g1453 356 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 Gene3D AP2/ERF domain 42 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 FunFam AP2-like ethylene-responsive transcription factor 143 204 - -
Cec06g1453 356 MobiDBLite consensus disorder prediction 243 268 - -
Cec06g1453 356 MobiDBLite consensus disorder prediction 1 41 - -
Cec06g1453 356 CDD AP2 143 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 256 - -
Cec06g1453 356 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 FunFam AP2-like ethylene-responsive transcription factor 41 110 - -
Cec06g1453 356 Pfam AP2 domain 43 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 Pfam AP2 domain 143 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 SUPERFAMILY DNA-binding domain 41 109 IPR016177 GO:0003677(InterPro)
Cec06g1453 356 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 SMART rav1_2 144 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 SMART rav1_2 42 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 ProSiteProfiles AP2/ERF domain profile. 42 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g1453 356 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1453 Cec-Chr6:28022843 Cec09g0344 Cec-Chr9:2893611 4.60E-113 dispersed
Cec06g1453 Cec-Chr6:28022843 Cec05g2427 Cec-Chr5:35504013 6.50E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29795 PF00847 AP2 7.10E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1453 K09285 - csv:101219103 666.766