Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g1453 | ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAGACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGTTTATCTTGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCATCGGAACAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTGTCTTTGCCTGTGAGACCTCAGGATCTTATTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGGTATCGCATTACGATTTCGTGGATTAG | 1071 | 48.55 | MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSEQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTVFACETSGSYCYGEAEDAIFSDFNSFIPPPVSHYDFVD | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28022843 | 28027180 | + | CePI673135_06g014530.1 | Cec06g1453 | 206190 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g1453 | 356 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cec06g1453 | 356 | Gene3D | AP2/ERF domain | 143 | 204 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | Gene3D | AP2/ERF domain | 42 | 110 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | FunFam | AP2-like ethylene-responsive transcription factor | 143 | 204 | - | - | |
Cec06g1453 | 356 | MobiDBLite | consensus disorder prediction | 243 | 268 | - | - | |
Cec06g1453 | 356 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cec06g1453 | 356 | CDD | AP2 | 143 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 28 | 256 | - | - | |
Cec06g1453 | 356 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | PRINTS | Ethylene responsive element binding protein signature | 184 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | FunFam | AP2-like ethylene-responsive transcription factor | 41 | 110 | - | - | |
Cec06g1453 | 356 | Pfam | AP2 domain | 43 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | Pfam | AP2 domain | 143 | 194 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | SUPERFAMILY | DNA-binding domain | 41 | 109 | IPR016177 | GO:0003677(InterPro) | |
Cec06g1453 | 356 | ProSiteProfiles | AP2/ERF domain profile. | 144 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | SMART | rav1_2 | 144 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | SMART | rav1_2 | 42 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec06g1453 | 356 | SUPERFAMILY | DNA-binding domain | 143 | 204 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1453 | Cec-Chr6:28022843 | Cec09g0344 | Cec-Chr9:2893611 | 4.60E-113 | dispersed | |
Cec06g1453 | Cec-Chr6:28022843 | Cec05g2427 | Cec-Chr5:35504013 | 6.50E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29795 | PF00847 | AP2 | 7.10E-13 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g1453 | K09285 | - | csv:101219103 | 666.766 |