Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1481 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGTAACGAAGCAGTGCAACTTGAGAAGTCATCGTCAAGATACTATATTCCGTCGTCTACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAAATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATATCTTTACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAATATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGTACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACCGTGCGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCAACGTTTTGTGCAATATAAGTGGGTAGCAACAAGGGGAGTTGATGAAGAAACCATCTTACAGAGCTTGCCTGCTGATCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCGGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGGCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAAAGAATCATTTACTTTATCAGAAAAGGTGGCTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCGTTGAGCCAGATAGATAA 2199 42.06 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSKFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRNTWANSTLVFEKCGTHGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVQRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEKVADETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSVEPDR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28330910 28336872 + CePI673135_06g014810.1 Cec06g1481 206218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1481 732 Gene3D - 113 421 - -
Cec06g1481 732 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Cec06g1481 732 Gene3D Jelly Rolls 494 614 IPR014710 -
Cec06g1481 732 Pfam Cyclic nucleotide-binding domain 519 607 IPR000595 -
Cec06g1481 732 Gene3D Helix hairpin bin 424 487 - -
Cec06g1481 732 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Cec06g1481 732 CDD CAP_ED 496 627 IPR000595 -
Cec06g1481 732 SUPERFAMILY Voltage-gated potassium channels 88 418 - -
Cec06g1481 732 MobiDBLite consensus disorder prediction 706 732 - -
Cec06g1481 732 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Cec06g1481 732 SUPERFAMILY cAMP-binding domain-like 426 618 IPR018490 -
Cec06g1481 732 SMART cnmp_10 496 627 IPR000595 -
Cec06g1481 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 713 - -
Cec06g1481 732 Pfam Ion transport protein 96 423 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g1481 732 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1481 732 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1481 732 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1481 732 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1481 732 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1809 Cec-Chr1:32507864 Cec06g1481 Cec-Chr6:28330910 7.50E-114 dispersed
Cec04g1044 Cec-Chr4:29986672 Cec06g1481 Cec-Chr6:28330910 3.70E-177 dispersed
Cec05g2877 Cec-Chr5:38943659 Cec06g1481 Cec-Chr6:28330910 9.80E-280 dispersed
Cec06g1481 Cec-Chr6:28330910 Cec06g1888 Cec-Chr6:32183045 1.00E-228 dispersed
Cec06g1481 Cec-Chr6:28330910 Cec10g1452 Cec-Chr10:28866671 3.10E-241 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1481 K27629 - csv:101218643 1408.66