Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1496 ATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGCAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTCGCTTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACCATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCACCTGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGACAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA 1191 43.41 MGSSFSCCDSEKADQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVACLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHHLASKEFHGGGGDDQDSFDYGVFSAIEEQRIIREYPYNNNKQPPNFWRMNA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28524751 28528213 + CePI673135_06g014960.1 Cec06g1496 206233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1496 396 Gene3D Phosphorylase Kinase; domain 1 10 114 - -
Cec06g1496 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1496 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 11 114 - -
Cec06g1496 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 115 323 - -
Cec06g1496 396 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Cec06g1496 396 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524(InterPro)
Cec06g1496 396 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1496 396 PANTHER OS01G0750732 PROTEIN 22 317 IPR050885 -
Cec06g1496 396 SMART serkin_6 39 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1496 396 SUPERFAMILY Protein kinase-like (PK-like) 21 329 IPR011009 -
Cec06g1496 396 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1496 396 CDD STKc_IRAK 45 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1496 Cec-Chr6:28524751 Cec11g0552 Cec-Chr11:6039190 1.70E-76 dispersed
Cec06g1496 Cec-Chr6:28524751 Cec07g1364 Cec-Chr7:29242073 3.50E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72095 PF00069 Pkinase 7.30E-45 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1496 - - - 0.0