Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1497 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCTCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCTAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTCTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCCGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCTTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1128 51.06 MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLLCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNLVNNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDVQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28540475 28541698 - CePI673135_06g014970.1 Cec06g1497 206234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1497 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Cec06g1497 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Cec06g1497 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Cec06g1497 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Cec06g1497 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Cec06g1497 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 360 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cec06g1497 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Cec06g1497 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
Cec06g1497 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Cec06g1497 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1497 Cec-Chr6:28540475 Cec08g0565 Cec-Chr8:16727098 3.40E-10 dispersed
Cec02g0874 Cec-Chr2:10861041 Cec06g1497 Cec-Chr6:28540475 4.20E-06 transposed
Cec05g2456 Cec-Chr5:35732402 Cec06g1497 Cec-Chr6:28540475 3.60E-07 transposed
Cec07g1647 Cec-Chr7:32048955 Cec06g1497 Cec-Chr6:28540475 1.80E-06 transposed
Cec07g1735 Cec-Chr7:32910918 Cec06g1497 Cec-Chr6:28540475 1.20E-28 transposed
Cec08g1431 Cec-Chr8:26111922 Cec06g1497 Cec-Chr6:28540475 2.10E-67 transposed
Cec11g1272 Cec-Chr11:26687121 Cec06g1497 Cec-Chr6:28540475 3.30E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29797 PF00643 zf-B_box 6.70E-07 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1497 - - - 0.0