Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1517 ATGCAGCAGAGGCAAACCAGGTATATGGAGAGGACGAACTCCATGAGGGAAAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGAGAAAACGACCAGCTCTAGCTAGTGTGATAGTAGAAGCTCTGAAGGTGGATAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTTCTGGAAGGTCTTCTCCTAAAAGGATTGAAGGTCCCGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTAGAAGGTGAACAGGGTGCAGCAATCCATGTTGTTCTAGTTGATGCCAACACAGGCCATGTAGTAACATCTGGACAGGAAGCCTTGTCTAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTTGGGTTAAAGGTGGCTTCTGGGTTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAGCATTACCCACCTGCATTAAATGATGAGGTGTGGAGATTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAGCGGCTTAACAAAAGTGGAATATTCTCTGTTGAAGACTTTCTCCGAATGGTCGTTCGTGATTCTCAAAAGTTGCGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCCTAGAACATGCTAAGACCTGTGTCCTGAGCGGGAAGCTGTATATTTATTATCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCTGATAGCCAGAAGGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGCAAGTCACTTTTGAGCTCTAAGCAGCCTAAGAAGTCCAATGCATCCCGAAACGACTTTCAAGGTGGTCATCTTGATATTTCTAATACTCTAGATCACGGACCACTGCCCCGCATGCCAGTGTCAGTTCAGCATCAGCAGCCTGTAGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACTTCTCGACCACAGTTTGACAACTCTCCATTTACTTCTAATGACTTGATCGGCAATTCTACCCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCGCTCGGTTCCTCTATTCAGGAATCTAATCTGAATCCATTTGACTGGTCAAACAATAGGGACAAGGGAGTTGACGACTTCTTTTCGGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATGGGAGGGCATGCATCTGTTAACGTCCATGATGAAGGCTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGTTCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGAAAGAAAGCAGCTGAGAGACGTGCGCAGATTGTCGAGTTGGACGAGGAATAG 1917 43.45 MQQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARISGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGQEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKSGIFSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSNASRNDFQGGHLDISNTLDHGPLPRMPVSVQHQQPVVDSGLSVAGYNDNTATRYSTQPQFVNSTSRPQFDNSPFTSNDLIGNSTQVHITRNDNSAFGLALGPPQASSSGFQALGSSIQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHASVNVHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28690923 28696994 + CePI673135_06g015170.1 Cec06g1517 206254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1517 638 Pfam Calmodulin binding protein central domain 256 322 IPR046830 -
Cec06g1517 638 MobiDBLite consensus disorder prediction 394 421 - -
Cec06g1517 638 PANTHER OS02G0177800 PROTEIN 16 629 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Cec06g1517 638 MobiDBLite consensus disorder prediction 1 29 - -
Cec06g1517 638 Pfam Calmodulin binding protein C-terminal domain 327 389 IPR046829 -
Cec06g1517 638 MobiDBLite consensus disorder prediction 394 415 - -
Cec06g1517 638 MobiDBLite consensus disorder prediction 10 29 - -
Cec06g1517 638 Pfam Calmodulin binding protein-like N-terminal domain 97 244 IPR046831 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1640 Cec-Chr1:31003234 Cec06g1517 Cec-Chr6:28690923 4.50E-87 dispersed
Cec01g1641 Cec-Chr1:31048458 Cec06g1517 Cec-Chr6:28690923 1.20E-86 dispersed
Cec06g1517 Cec-Chr6:28690923 Cec06g1872 Cec-Chr6:32055383 2.70E-92 dispersed
Cec06g1517 Cec-Chr6:28690923 Cec02g1598 Cec-Chr2:33538004 1.10E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1517 - - - 0.0