Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1526 ATGGCGGCCGACCACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCCCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCACCACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGCGTGGCCGCTGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACCCCGGCGAACCCATTCTTCACGCCGACGGAAATTGCAAAACAAGCGACGTCATCCGGCGCCAAACTTATCATAACCCAAGCCGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGACGTGGCAAAGGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCATTGCCTTACTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTGCAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCAGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTTCCCATGTCATTCTCGGCCAGGGATATGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGTCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGAAGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGCTTTACTCGCAGCTAGTATTCCTAATTAA 1656 48.97 MAADHDSSPEFIFRSKLPDIPIPTHLPLHSYCFEKISEFKYRPCLINATTGNTYTYDEVHITSRRVAAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPTEIAKQATSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDDVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSQALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLSHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDEDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRALLAASIPN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28765352 28769471 - CePI673135_06g015260.1 Cec06g1526 206263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1526 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 542 - GO:0016405(PANTHER)
Cec06g1526 551 Pfam AMP-binding enzyme 37 409 IPR000873 -
Cec06g1526 551 SUPERFAMILY Acetyl-CoA synthetase-like 14 547 - -
Cec06g1526 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Cec06g1526 551 Gene3D - 10 446 IPR042099 -
Cec06g1526 551 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cec06g1526 551 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cec06g1526 551 CDD 4CL 22 541 - -
Cec06g1526 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 446 - -
Cec06g1526 551 Gene3D - 447 548 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1526 Cec-Chr6:28765352 Cec09g0356 Cec-Chr9:2985409 4.80E-202 dispersed
Cec01g0277 Cec-Chr1:2808905 Cec06g1526 Cec-Chr6:28765352 5.50E-51 transposed
Cec03g0278 Cec-Chr3:3082337 Cec06g1526 Cec-Chr6:28765352 8.30E-106 transposed
Cec05g1400 Cec-Chr5:15679242 Cec06g1526 Cec-Chr6:28765352 2.10E-24 transposed
Cec05g1691 Cec-Chr5:28083572 Cec06g1526 Cec-Chr6:28765352 1.20E-99 transposed
Cec05g2359 Cec-Chr5:34845651 Cec06g1526 Cec-Chr6:28765352 4.40E-94 transposed
Cec07g0263 Cec-Chr7:2578381 Cec06g1526 Cec-Chr6:28765352 6.40E-89 transposed
Cec07g0439 Cec-Chr7:4554224 Cec06g1526 Cec-Chr6:28765352 2.00E-16 transposed
Cec10g1289 Cec-Chr10:27002219 Cec06g1526 Cec-Chr6:28765352 2.90E-207 transposed
Cec11g1308 Cec-Chr11:27128232 Cec06g1526 Cec-Chr6:28765352 1.00E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1526 K01904 - csv:101218077 876.315