Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec06g1541 | ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACAAACTTCGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGACTCTGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCGTCATCAACCGCAACTTTCATCTCGTCACAGCAGAACAACAACTCCTCCTCGAATAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATGTTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATCACCGACTTAGCATCGAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGAGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA | 1449 | 49.0 | MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSDSAASDGGSRSAEERDVHHSPPSSTATFISSQQNNNSSSNNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDVPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMREFEAHAKPSLFQTPIFGME | 482 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28928123 | 28932061 | + | CePI673135_06g015410.1 | Cec06g1541 | 206278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 47 | 73 | - | - | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 310 | 369 | - | - | |
| Cec06g1541 | 482 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 93 | 360 | - | - | |
| Cec06g1541 | 482 | PRINTS | Ethylene responsive element binding protein signature | 139 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | PRINTS | Ethylene responsive element binding protein signature | 277 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | FunFam | AP2-like ethylene-responsive transcription factor | 236 | 297 | - | - | |
| Cec06g1541 | 482 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 310 | 330 | - | - | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
| Cec06g1541 | 482 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 137 | 203 | - | - | |
| Cec06g1541 | 482 | SUPERFAMILY | DNA-binding domain | 137 | 203 | IPR016177 | GO:0003677(InterPro) | |
| Cec06g1541 | 482 | SMART | rav1_2 | 138 | 207 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | SMART | rav1_2 | 237 | 301 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | Pfam | AP2 domain | 139 | 193 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | Pfam | AP2 domain | 238 | 287 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | SUPERFAMILY | DNA-binding domain | 236 | 297 | IPR016177 | GO:0003677(InterPro) | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 344 | 369 | - | - | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 87 | 132 | - | - | |
| Cec06g1541 | 482 | ProSiteProfiles | AP2/ERF domain profile. | 237 | 295 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | CDD | AP2 | 236 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | Gene3D | AP2/ERF domain | 237 | 297 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | Gene3D | AP2/ERF domain | 138 | 203 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec06g1541 | 482 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
| Cec06g1541 | 482 | CDD | AP2 | 137 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec06g1541 | Cec-Chr6:28928123 | Cec11g0922 | Cec-Chr11:14235145 | 1.30E-99 | dispersed | |
| Cec06g1541 | Cec-Chr6:28928123 | Cec04g1474 | Cec-Chr4:34282342 | 3.00E-91 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29801 | PF00847 | AP2 | 9.00E-10 | CL0081 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec06g1541 | K09285 | - | csv:101210453 | 672.93 |