Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1549 ATGGCGGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGACCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCACAACTCAAGAAGGAGAAGACAGACTTCAATTATTCGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTAAAGTTTTTGGGGTTCATGTGGAATCCCTTATCATGGGTCATGGAAGCTGCAGCCATTATGGCAATTGCTTTGGCTAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTAGGAATTATATGTTTATTGGTGATTAACTCCACAATCAGTTTCATCGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAGACTAAGGTGCTGAGGGATGGCAAATGGAGTGAGCAGGATGCAGCAATTTTGGTTCCAGGAGATATAATTAGTGTAAAGTTGGGAGATATTATCCCGGCGGATGCTCGGCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAAAATCCAGGGGATGAAATCTTCTCTGGTTCAACTTGCAAACAAGGGGAAATTGAAGCTGTTGTAATTGCTACGGGTGTCCATACTTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACTCACCAAGTTGGTCACTTCCAAAAAGTGCTTACATCCATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGTTTATTGAGATTATTGTAATGTACCCAATTCAACGTCGTAAATACCGTGACGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCAATTGCTATGCCTACTGTCCTGTCTGTCACAATGGCTATTGGATCTCATAAGCTATCCCAACAGGGTGCCATCACGAAGCGTATGACTGCCATTGAAGAATTGGCGGGTATGGATGTCCTTTGCAGTGATAAAACAGGGACATTGACTCTAAACAAGCTTAGTGTTGATGTAAATTTGGTTGAGGTTTTTGCTAAGGGTGTGGATAAACAACATGTCATTTTGCTGGCTGCAAGAGCTTCTCGAATCGAAAATCAAGATGCAATTGATACTGCTATTGTAGGAATGCTAGCTGATCCTAAAGAGGCACGAGCAGACATCAGAGAAGTGCATTTCTTCCCATTCAATCCAGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCCGAGCAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAGGAAGAGGGCTCATTCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGTTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTGTTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTTAATCTAGGAGTGAACGTCAAGATGATTACTGGTGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCCGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTAGAAGAGTTAATAGAAAAGGCAGATGGCTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAGGAAGCTGCAGGAGAGGAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATCGCAGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATCGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACCATATATGCAGTTTCAATCACAATACGTATCGTGTTTGGCTTCTTGTTTATTGCCCTCATATGGAAATTTGACTTCTCCCCATTCATGGTTTTGATCATTGCCATTCTAAATGATGGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTATCATATTCTTCTGGGTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTGCAAGTGAGTATTGTCAGCCAGGCCTTGATATTTGTGACTCGATCGCGCAGTTGGTCCTACGTAGAACGACCGGGGTTGCTACTGATGGGTGCTTTCGTTATTGCACAACTGGTAGCAACACTCATAGCAGTATATGCCAATTGGGGATTTGCAAAGATAAAAGGGGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTATAGTATTATTTTCTACATTCCATTAGACTTGATCAAGTTTGCAATTCGCTATATCCTCAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAGAAGTAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCGGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGCTTAGGGAGCTGAATACTCTGAAGGGTCATGTTGAATCAGTAGTGAAATTGAAAGGGCTGGATATTGATACAATCCAACAACATTACACAGTGTAA 2862 43.05 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLTTQEGEDRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMFIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDVNLVEVFAKGVDKQHVILLAARASRIENQDAIDTAIVGMLADPKEARADIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVRKRAHSVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTIIFFWVMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFVIAQLVATLIAVYANWGFAKIKGAGWGWAGVVWIYSIIFYIPLDLIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERSSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 953
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 29026071 29033381 + CePI673135_06g015490.1 Cec06g1549 206286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1549 953 Gene3D - 95 816 - -
Cec06g1549 953 SUPERFAMILY HAD-like 326 636 IPR036412 -
Cec06g1549 953 Gene3D - 133 217 - -
Cec06g1549 953 FunFam Plasma membrane ATPase 342 489 - -
Cec06g1549 953 Gene3D - 327 626 IPR023214 -
Cec06g1549 953 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cec06g1549 953 SFLD p-type atpase 312 640 IPR044492 -
Cec06g1549 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cec06g1549 953 Coils Coil 904 924 - -
Cec06g1549 953 FunFam ATPase 4 plasma membrane-type 574 816 - -
Cec06g1549 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 848 IPR023298 -
Cec06g1549 953 Gene3D - 902 953 - -
Cec06g1549 953 SFLD Haloacid Dehalogenase 312 640 - -
Cec06g1549 953 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Cec06g1549 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cec06g1549 953 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cec06g1549 953 NCBIfam HAD-IC family P-type ATPase 564 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 NCBIfam HAD-IC family P-type ATPase 102 345 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec06g1549 953 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cec06g1549 953 Pfam E1-E2 ATPase 132 309 - -
Cec06g1549 953 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cec06g1549 953 PANTHER CALCIUM-TRANSPORTING ATPASE 18 876 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cec06g1549 953 FunFam Plasma membrane ATPase 482 637 - -
Cec06g1549 953 FunFam Plasma membrane ATPase 133 217 - -
Cec06g1549 953 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cec06g1549 953 Gene3D - 342 489 IPR023299 GO:0000166(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1549 Cec-Chr6:29026071 Cec08g1307 Cec-Chr8:25022800 0.00E+00 dispersed
Cec06g1549 Cec-Chr6:29026071 Cec06g1557 Cec-Chr6:29140392 1.30E-18 proximal
Cec11g1242 Cec-Chr11:25962783 Cec06g1549 Cec-Chr6:29026071 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1549 K01535 - csv:101221783 1763.04