Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1564 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTAGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGTGGTGGAAAATCTGCGTCATCAACTAATACGAAAGGGAATGCAGAAAACATTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTCGGTGTCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCATCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAGGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTCGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTCCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTGTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCATCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTTAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTCTGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGTTTTACGCCGGTAAGGGAATAGCTATGGTAGGTGCCCCCAAATGGGATGGTGAAGCCACACAAACAAAATATATATTGATTAATTATGTAGTTGGATATTCAAGGAATGAGAACTGTGTACTCACTAACAAAAAGCAATTTCCATTTACGTACTTTTCTCTTGACAGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAGAAGATGAAATATGGAGTTACGGCACTTGAATACTATCAAGCAGTTCTCACCATATCAAGGTTTGTGTTCTGTATCCTCTGTAAGGTTCTGCACATCACTTCTGCTCTTGGCCTCATCCAATTTCCGTCTTTTGGAAGCTAA 2490 40.68 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSASSTNTKGNAENIEPVVKKNQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGVGSSMVSDGSNEEGITCGRRHRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTSNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKHHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDSGILDRSHMFEQPIVYVPVAVLKEKFYAGKGIAMVGAPKWDGEATQTKYILINYVVGYSRNENCVLTNKKQFPFTYFSLDRRSPRENETKSQQKKMKYGVTALEYYQAVLTISRFVFCILCKVLHITSALGLIQFPSFGS 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29232210 29240775 + CePI673135_06g015640.1 Cec06g1564 206301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1564 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Cec06g1564 829 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 34 711 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cec06g1564 829 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cec06g1564 829 Pfam Homeodomain 506 550 IPR001356 GO:0003677(InterPro)
Cec06g1564 829 Gene3D - 497 569 - -
Cec06g1564 829 MobiDBLite consensus disorder prediction 350 372 - -
Cec06g1564 829 MobiDBLite consensus disorder prediction 39 75 - -
Cec06g1564 829 MobiDBLite consensus disorder prediction 103 148 - -
Cec06g1564 829 ProSiteProfiles 'Homeobox' domain profile. 495 555 IPR001356 GO:0003677(InterPro)
Cec06g1564 829 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cec06g1564 829 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Cec06g1564 829 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Cec06g1564 829 CDD PHD_PRHA_like 239 291 IPR045876 -
Cec06g1564 829 FunFam pathogenesis-related homeodomain protein 497 561 - -
Cec06g1564 829 MobiDBLite consensus disorder prediction 442 462 - -
Cec06g1564 829 MobiDBLite consensus disorder prediction 106 120 - -
Cec06g1564 829 SMART PHD_3 239 292 IPR001965 -
Cec06g1564 829 MobiDBLite consensus disorder prediction 330 385 - -
Cec06g1564 829 CDD homeodomain 503 556 IPR001356 GO:0003677(InterPro)
Cec06g1564 829 SUPERFAMILY Homeodomain-like 498 561 IPR009057 -
Cec06g1564 829 SMART HOX_1 497 559 IPR001356 GO:0003677(InterPro)
Cec06g1564 829 Pfam PHD-finger 240 291 IPR019787 -
Cec06g1564 829 MobiDBLite consensus disorder prediction 556 579 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1214 Cec-Chr5:11152512 Cec06g1564 Cec-Chr6:29232210 2.60E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29802 PF00628 PHD 1.40E-09 CL0390 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1564 - - - 0.0