Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1568 ATGGATAGTATGGGAGAGGATTACTTGAATTCGTTTGGAGGTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCACCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTAAAGAAGATAGCAGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTCCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.36 MDSMGEDYLNSFGGDIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRIPPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 29284668 29288657 - CePI673135_06g015680.1 Cec06g1568 206305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1568 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec06g1568 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Cec06g1568 245 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cec06g1568 245 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Cec06g1568 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Cec06g1568 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Cec06g1568 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2764 Cec-Chr5:38087012 Cec06g1568 Cec-Chr6:29284668 2.00E-18 dispersed
Cec06g1568 Cec-Chr6:29284668 Cec10g0083 Cec-Chr10:787961 1.20E-11 dispersed
Cec11g1209 Cec-Chr11:25188406 Cec06g1568 Cec-Chr6:29284668 2.10E-61 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29804 PF00010 HLH 1.60E-11 No_clan Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1568 - - - 0.0