Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1579 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTGCAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCTCAAACTATTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTCTTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGAAAGGTTGATCTCTCGGTCTTTGTGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACGGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGCGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 50.54 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTINNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFVTPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29397387 29398806 - CePI673135_06g015790.1 Cec06g1579 206316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1579 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1579 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1579 278 Gene3D WRKY domain 190 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1579 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 267 IPR044810 GO:0003700(InterPro)
Cec06g1579 278 MobiDBLite consensus disorder prediction 97 122 - -
Cec06g1579 278 FunFam WRKY transcription factor 65 187 264 - -
Cec06g1579 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Cec06g1579 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1579 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2882 Cec-Chr5:38992546 Cec06g1579 Cec-Chr6:29397387 1.10E-69 dispersed
Cec06g1579 Cec-Chr6:29397387 Cec07g0096 Cec-Chr7:997366 1.20E-39 dispersed
Cec06g1579 Cec-Chr6:29397387 Cec05g2240 Cec-Chr5:33863963 9.00E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29805 PF03106 WRKY 1.20E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1579 - - - 0.0