Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1591 ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAACAACAACAACAACTCTCCTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACAACAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCAGTACAACAACAACAACAACAATATTATTACTACTAATCATAATTATAAGGGTATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACAACTTTGAATCCCGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCCAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 828 38.16 MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQLSFTLIPKEELGINNNDDNNNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHQYNNNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29489667 29491227 + CePI673135_06g015910.1 Cec06g1591 206328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1591 275 Pfam Homeodomain 142 196 IPR001356 GO:0003677(InterPro)
Cec06g1591 275 MobiDBLite consensus disorder prediction 104 145 - -
Cec06g1591 275 Coils Coil 197 231 - -
Cec06g1591 275 SMART HOX_1 140 202 IPR001356 GO:0003677(InterPro)
Cec06g1591 275 SMART halz 198 241 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1591 275 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec06g1591 275 MobiDBLite consensus disorder prediction 112 135 - -
Cec06g1591 275 CDD homeodomain 142 199 IPR001356 GO:0003677(InterPro)
Cec06g1591 275 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677(InterPro)
Cec06g1591 275 FunFam Homeobox-leucine zipper protein 18 127 203 - -
Cec06g1591 275 SUPERFAMILY Homeodomain-like 130 199 IPR009057 -
Cec06g1591 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 263 IPR050762 -
Cec06g1591 275 Gene3D - 133 203 - -
Cec06g1591 275 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1591 Cec-Chr6:29489667 Cec10g0842 Cec-Chr10:16896854 8.90E-40 dispersed
Cec06g1591 Cec-Chr6:29489667 Cec09g0378 Cec-Chr9:3241315 4.70E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29806 PF00046 Homeodomain 1.00E-15 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1591 K09338 - csv:101203427 384.03