Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1611 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTTTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGGGAATTGGGCTACGGGGTCGTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCTTTCTCAGGCATTGAAGGTTTATGTGGACCACCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCGTCGTCTAATGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCGTGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGAGAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCCTTGACAAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACACCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACACTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTACGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCACGCTCATGAGCTAATGGTGGCTTACAAATCGCCGGAGTATTCGCAACAAGGTCGCATAACAAAGAAGACAGATGTGTGGTGCTTTGGCCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCAAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGACCAGCCAAGAGCAGTGAGGGCGAAATGTTAAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGTGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCGTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1956 44.58 MARPSTPPPTALFLILILIISLVEQLIVFCTASTDAEALLKFKSSLEITNDALGNWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGIEGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSNEEDPAHGKSPCASELDPGVGSKSPDRGSSHGSGSGKRSAESAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYTELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPAKSSEGEMLKLLRIAMACCESDFEKRLDLREVVEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29688440 29690897 + CePI673135_06g016110.1 Cec06g1611 206348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1611 651 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Cec06g1611 651 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cec06g1611 651 FunFam Pollen receptor-like kinase 1 419 629 - -
Cec06g1611 651 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1611 651 Gene3D Phosphorylase Kinase; domain 1 310 418 - -
Cec06g1611 651 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Cec06g1611 651 FunFam Nuclear pore complex protein NUP107 32 193 - -
Cec06g1611 651 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Cec06g1611 651 FunFam pollen receptor-like kinase 1 312 418 - -
Cec06g1611 651 SUPERFAMILY Protein kinase-like (PK-like) 347 616 IPR011009 -
Cec06g1611 651 MobiDBLite consensus disorder prediction 280 325 - -
Cec06g1611 651 Gene3D Ribonuclease Inhibitor 148 242 IPR032675 -
Cec06g1611 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 620 IPR046959 -
Cec06g1611 651 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1611 651 MobiDBLite consensus disorder prediction 307 321 - -
Cec06g1611 651 SUPERFAMILY L domain-like 33 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1611 Cec-Chr6:29688440 Cec07g1592 Cec-Chr7:31442467 6.20E-124 dispersed
Cec05g2871 Cec-Chr5:38889984 Cec06g1611 Cec-Chr6:29688440 3.30E-143 transposed
Cec08g1291 Cec-Chr8:24893880 Cec06g1611 Cec-Chr6:29688440 2.80E-135 transposed
Cec10g0930 Cec-Chr10:20539728 Cec06g1611 Cec-Chr6:29688440 1.40E-88 transposed
Cec01g1590 Cec-Chr1:30557270 Cec06g1611 Cec-Chr6:29688440 6.00E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72098 PF07714 PK_Tyr_Ser-Thr 4.70E-30 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1611 K28077 - csv:101213261 1101.27