Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1636 ATGTGGACGTTGGGTTACGATGACAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTTGTCCCTCGCCCTTTGCCTTCCCTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTGTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTTAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACCACCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAACTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCACCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGAAGAGACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAGACAGTGTCATCGAATCCCGCAACGGAGACCGACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAACGATGACACTTCAGTTGTTTCCACTCCATAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGTGATGACCAACTGGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 975 45.23 MWTLGYDDNGGEFCFSEAFNGGRKLRPLVPRPLPSLHANGANFSSQYYHLGNHLNEDNKRGLLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITTQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYETEETKTKCRWGRATPPPSIISSTLLSKEWAETQRKTKVVELEEEEEETRRESVEREETWNYNNILNCQLINPTRKTQHLDSVIESRNGDRRHNVVDNNNDDEESKTMTLQLFPLHSTKFYKYDSEREGRRDDQLEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29965907 29969866 - CePI673135_06g016360.1 Cec06g1636 206373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1636 324 FunFam WUSCHEL-related homeobox 4 79 146 - -
Cec06g1636 324 MobiDBLite consensus disorder prediction 138 158 - -
Cec06g1636 324 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Cec06g1636 324 MobiDBLite consensus disorder prediction 141 158 - -
Cec06g1636 324 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Cec06g1636 324 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Cec06g1636 324 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cec06g1636 324 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 319 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cec06g1636 324 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Cec06g1636 324 Gene3D - 79 148 - -
Cec06g1636 324 Coils Coil 198 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2178 Cec-Chr2:39193871 Cec06g1636 Cec-Chr6:29965907 9.00E-23 dispersed
Cec03g0160 Cec-Chr3:1585439 Cec06g1636 Cec-Chr6:29965907 4.90E-25 dispersed
Cec06g1636 Cec-Chr6:29965907 Cec08g1665 Cec-Chr8:27970519 2.60E-22 dispersed
Cec04g1726 Cec-Chr4:36280308 Cec06g1636 Cec-Chr6:29965907 8.60E-23 transposed
Cec11g0658 Cec-Chr11:7227661 Cec06g1636 Cec-Chr6:29965907 3.60E-22 transposed
Cec01g1608 Cec-Chr1:30740878 Cec06g1636 Cec-Chr6:29965907 1.00E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29807 PF00046 Homeodomain 3.40E-19 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1636 - - - 0.0