Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1643 ATGCAAATGGCTGGTGGTGATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATAATCCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 843 52.55 MQMAGGDQDMAVHSLASKLSVVSEHEPEQCGNNNNNNPTNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30034982 30036006 + CePI673135_06g016430.1 Cec06g1643 206380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1643 280 CDD DUF296 100 182 IPR005175 -
Cec06g1643 280 ProSiteProfiles PPC domain profile profile. 96 234 IPR005175 -
Cec06g1643 280 Gene3D - 99 235 - -
Cec06g1643 280 MobiDBLite consensus disorder prediction 26 48 - -
Cec06g1643 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 65 241 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec06g1643 280 FunFam AT-hook motif nuclear-localized protein 99 226 - -
Cec06g1643 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Cec06g1643 280 MobiDBLite consensus disorder prediction 1 89 - -
Cec06g1643 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1643 Cec-Chr6:30034982 Cec07g0387 Cec-Chr7:3952144 1.10E-58 dispersed
Cec06g1643 Cec-Chr6:30034982 Cec02g1771 Cec-Chr2:35542995 2.10E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1643 - - - 0.0