Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1647 ATGGTTTTTGTTTTCCTTTTTATAGAATATTGTTGTGGTGTTCTTGCTACTGAGGCAAGAGCTCTTCTTCATGGGCTGAAGGTGGTGGAGGAGATTAGAGAGTGGTTGGTTAGAGCCGTATTGAGGATGTTAATTACATTATTTGGGATTGATGCTCGTAGTCTAGCTGGGTGGGCTTGTACTAATGCAAGGTGTGGAATTTGGACCTCTGTTATGCCCTTGTGGCTTCAGGCGATCCTCCATGACGAGACTTTGTTTCCTAGGGTTCTCCAAGTTACAACCGCCTATAGCCGGTCGTCTTCCCAAAACCCTAATTTTCTCGACTATATATACCTTCTCATCTTCCTCGCTTCCTCCTCTATCGCTCACAAATTTACAATCCTTTACACAGCCAAAGGCGTAGAACCAAAGCAGAGCTCAAAAATGGCGGAGGGGCTTGTTCTGCGAGGCACAATGAGGGCTCACACCGACATGGTGACGGCCATCGCCACTCCCATCGACAATTCCGATATGATTGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACCAAGGAAGAGAAGACCTACGGCGTTCCTCAACGAAGGCTCAATGGTCACTCCCACTTTGTTCAAGATGTTGTCCTCTCATCCGACGGTCAGTTCGCCCTATCTGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTTGCTACCGGCGTTACATCACGTCGATTCGTTGGACATTCGAAAGATGTTCTCTCTGTCGCCTTCTCCATCGACAATCGTCAGATCGTCTCGGCTTCTCGTGACCGAACGATCAAGCTATGGAACACTCTCGGTGAGTGCAAGTACACAATCCAGGACGGTGATGCTCACTCTGACTGGGTTAGTTGTGTTAGATTTAGCCCTAACACGCTCCAGCCAACTATTGTTTCGGCGTCATGGGACAAGACCGTGAAGGTCTGGAACTTGACCAATTGCAAGTTGAGAGTTACTCTCGCTGGTCACGCTGGTTATGTCAACACAGTGGCTGTTTCGCCGGATGGGTCTCTGTGCGCTAGCGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCTGAGGGTAAGAGGCTCTATTCCTTGGATGCCGGATCAATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCAACTGAGAGCAGTATTAAGATCTGGGATTTGGAGAGCAAAAGTATTGTGGAAGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCCACTGCCAACAAGATTAAGGTTATTTACTGCACAAGTTTGAGCTGGAGCGCAGATGGGAGCACATTGTTTGGTGGCTACACAGATGGAGTCGTCAGAGTTTGGGGAATTGGTCGTTACTAG 1407 49.04 MVFVFLFIEYCCGVLATEARALLHGLKVVEEIREWLVRAVLRMLITLFGIDARSLAGWACTNARCGIWTSVMPLWLQAILHDETLFPRVLQVTTAYSRSSSQNPNFLDYIYLLIFLASSSIAHKFTILYTAKGVEPKQSSKMAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFGGYTDGVVRVWGIGRY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30075212 30077504 - CePI673135_06g016470.1 Cec06g1647 206384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 323 - -
Cec06g1647 468 Pfam WD domain, G-beta repeat 149 184 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 439 463 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 195 232 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 325 362 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 278 320 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 Pfam WD domain, G-beta repeat 367 402 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 367 - -
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 329 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 FunFam Receptor for activated C kinase 1 149 468 - -
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 235 274 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 365 402 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 430 464 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 276 320 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 145 185 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 SMART WD40_4 323 362 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 236 - -
Cec06g1647 468 Gene3D - 145 468 IPR015943 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 274 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 468 IPR001680 GO:0005515(InterPro)
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 274 - -
Cec06g1647 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 186 - -
Cec06g1647 468 ProSitePatterns Trp-Asp (WD) repeats signature. 307 321 IPR019775 -
Cec06g1647 468 SUPERFAMILY WD40 repeat-like 147 465 IPR036322 GO:0005515(InterPro)
Cec06g1647 468 CDD WD40 148 463 - -
Cec06g1647 468 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Cec06g1647 468 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Cec06g1647 468 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Cec06g1647 468 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Cec06g1647 468 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 138 465 IPR045223 GO:0001934(PANTHER)|GO:0005080(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0043022(PANTHER)|GO:0043022(InterPro)|GO:0045182(InterPro)|GO:0072344(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1647 K14753 - - csv:101216713 663.685
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005819 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 39