Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1678 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATAGCTTCTCACTTTTCTCCTTCAATTCCAAATTTCACTCACTTTTTACCATTTTCCACTACTACTCCCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACAACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGAAATTTCAACTCCCCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGTGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCATTGA 783 41.0 MADHDFTSFPLEDPNLELIASHFSPSIPNFTHFLPFSTTTPTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSEISTPQVSETGFKTKYSSGKGKRLKGVEKEEVKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30365947 30367626 + CePI673135_06g016780.1 Cec06g1678 206415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1678 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec06g1678 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Cec06g1678 260 FunFam transcription factor BEE 3-like 146 217 - -
Cec06g1678 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Cec06g1678 260 Coils Coil 226 246 - -
Cec06g1678 260 CDD bHLH_AtBPE_like 139 224 - -
Cec06g1678 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Cec06g1678 260 MobiDBLite consensus disorder prediction 99 117 - -
Cec06g1678 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Cec06g1678 260 MobiDBLite consensus disorder prediction 92 133 - -
Cec06g1678 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1678 Cec-Chr6:30365947 Cec06g1853 Cec-Chr6:31891516 6.30E-27 dispersed
Cec05g1325 Cec-Chr5:13741522 Cec06g1678 Cec-Chr6:30365947 5.50E-33 transposed
Cec08g0522 Cec-Chr8:15403935 Cec06g1678 Cec-Chr6:30365947 1.90E-37 transposed
Cec01g1653 Cec-Chr1:31186710 Cec06g1678 Cec-Chr6:30365947 5.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29809 PF00010 HLH 4.30E-05 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1678 - - - 0.0