Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1688 ATGATCGAAATAAGCCTCCATGAAACCATGGACATTCGCGCCAAAACAGAGAAGAATAAGCGCAAACCTTCGACAAACTCCGCTCACAACCATCACCAGAAGAAGCGGCGGAGATTAGCAGTCAGTTCAGAAACCACAATCTCAACATCTAGCGAGCCTCAAAAGCTTGCCGCATCGAATAGGTTAAACCCAATTCGTTCTCCCTCTCGAGCTTCACGAAAACACGAGAAGAGGAGCTCGAGTCAGACGGATGGTCATCGTCGATGGGTGTACTCTGCTCGTGATTGCTCAAAATTTATAGATAAGATTATGGTTGCTTCATATAACATACTAGGAGCGGAAAATGCATCGAAGCATCCAGATTTGTATCATAGATTGCCCTCCAAATTCTTGGATTGGAGTTTCCGGAAAGAGCTTATAGGCAATGCAATTAAATTTTACAATGCAGGCATCTTATGCTTGCAGGAGGTTGACCGTTTCAATGATTTAGATGAACTCTTCCATAATTATGGCTACAAAGGTGTTTACAAGGCTAGAACTGGTGAAGCAAGTGATGGATGTGCTGTATTTTGGATCAACAAACTATTTTCCCTTTTGCATCAAGAAGCTATAGAGTTCCAGAGTTTTGGGCTACGTAACAATGTTGCTCAACTATGTGTTTTGAAGATGAATAAATCAAAATCAAAGTCCAAAACAAGTCGAAGCTTTGTGATTGGGAATATACACGTTCTTTTCAACCCAAATCGTGGAGACATTAAGCTTGGGCAGGTCAGACTGTTTCTTGAAAAAGCTCATAGCCTCGCACAAAGATGGGGAAATATACCTGTTATTATTGCGGGCGACATGAATAGCATACCAAAGAGTGCAGTGTATCAGTTTTTGGCTTCATCAGAGCTGGATATACAACTGCATGATCGCAGAAAGATTTCAGGGCAGCCTGATTTTTCATCATCACATGGGGCCGTCAGATTTTGTAGTGAGGGTACAAAGTGGTCCAATGTTTCAGCCTTAAGGTCCTTCAGATGGAGCGATGAGGAAATAAGGAATGCATCTGGTAGCGAGAATGTTACCCATCTTCAGCACCATTTAAAGCTTTACAGTGCGTACTCTGGGGTTCCTGGTAATTGTAAAACAAGAGATACTAATGGAGAACCTTTAGTAACTTCATTCCACTCCAAGTTTATGGGAACTGTTGATTATATATGGCACTCAGAAAAACTTGCCCCTGTTAGAGTTCTGGAAACATTGCCTGTTGATGCATTAAAGAGGACTGGAGGACTTCCAAATGAGAAATGGGGGAGTGATCATCTTGCTCTTGTGTGTGAACTGGCCTTTAATGACGATGGAAATATGACCTGA 1359 42.02 MIEISLHETMDIRAKTEKNKRKPSTNSAHNHHQKKRRRLAVSSETTISTSSEPQKLAASNRLNPIRSPSRASRKHEKRSSSQTDGHRRWVYSARDCSKFIDKIMVASYNILGAENASKHPDLYHRLPSKFLDWSFRKELIGNAIKFYNAGILCLQEVDRFNDLDELFHNYGYKGVYKARTGEASDGCAVFWINKLFSLLHQEAIEFQSFGLRNNVAQLCVLKMNKSKSKSKTSRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLAQRWGNIPVIIAGDMNSIPKSAVYQFLASSELDIQLHDRRKISGQPDFSSSHGAVRFCSEGTKWSNVSALRSFRWSDEEIRNASGSENVTHLQHHLKLYSAYSGVPGNCKTRDTNGEPLVTSFHSKFMGTVDYIWHSEKLAPVRVLETLPVDALKRTGGLPNEKWGSDHLALVCELAFNDDGNMT 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30454510 30461466 + CePI673135_06g016880.1 Cec06g1688 206425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1688 452 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 42 445 IPR050410 GO:0000175(PANTHER)
Cec06g1688 452 SUPERFAMILY DNase I-like 102 444 IPR036691 -
Cec06g1688 452 MobiDBLite consensus disorder prediction 1 86 - -
Cec06g1688 452 Gene3D Endonuclease/exonuclease/phosphatase 76 451 IPR036691 -
Cec06g1688 452 MobiDBLite consensus disorder prediction 1 24 - -
Cec06g1688 452 MobiDBLite consensus disorder prediction 42 67 - -
Cec06g1688 452 Pfam Endonuclease/Exonuclease/phosphatase family 106 436 IPR005135 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1688 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1881 Cec-Chr5:30872721 Cec06g1688 Cec-Chr6:30454510 7.30E-56 dispersed
Cec06g1688 Cec-Chr6:30454510 Cec06g1697 Cec-Chr6:30535564 4.80E-75 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36