Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1726 ATGTTTCTGTCGTCCTTCCTTCGATTTTTTACCTGCATTTGGCAATTGCAACAGCATCTCACACATGGGGCTAAAGCAAAAAACCCCTCCTCCCACAAAGAGAAGGGAAAAGTCTGTGCGAATCACTCACAGCAACGCATTCAATTCGTTTGTAGCTTTCTCCACCTGTCTTCCTTTTGTCTAGTCGATCGCGAAACCAGGCAGAAGCTACAGAAATTCAACAGCTGCTTACTGTTATTACTGAGAATAGTTCTTGTTCTTTCTTCCATAAGCAAACAGAAAAAAACTTCTAAATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGAGTGGCAGGACCATCGGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATTGATGGCAACTTTGATGATCCACGCCTAACAGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAACCTGTCCAGGTTCCTATTTATGATTTCAAGACTAGCAGTCGCGTGGGTTACAGGACTCTTGAAGTTCCCGAATCAAGGATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTGCGTCCATTGCTAGATCTTCGTGTATCAGTGACCGGTGGTGTTCATTTTGACTTGGTGAAACGGGTACTACGTGATATTCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTCTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACTGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACCGGTTTCCAGAATCCTACTTATATTCTTAAGTCAACGAAAGCAGTACCTGTGGATCAAATTAAGGCTGTTATATCCGAGAATCACAAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATATCACCTAGAATAACTTTTGAAGTTAGCGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCCACTATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTATAAAGATTGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCACGTTAAATGTGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGCTGGAGAAGCTTGTTAATGATGTTATGGCCTTGCCGGATGATTTAAAAACCAAGCTCAGCATAGACGACGAGTCACTTTCGAGTCCAAAGGAAGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAGATTTCTACTCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCTAAGATCTGTACTAGAAAAATTTCTGCTAGCCAGCAGAACTTGGTTTCACAATCCGATGCGTGCAACAATGGCTCCGGAGCAACTTCAATTTTCATATCTGGCTTGAGTAACGGTGCCTTAACCGGATCGCTACTGCCTCATTCTTCATCATCCTCCCAATTGCCCAAGGAATCTCCCTTGCTGGAAGAGATACAAAACATAGCACGGGTGCAGCGTCAAATCATTCTCCAAGTCGACAATTTGAGCAATCTTCTCCTGGAGCACTTGAGTGAGAGGGGTCGCCGGGGAAAAGCTGACGACGAAGGGAGGTGGAGGATTACTGATCTTGAATCCATCAGCACCCCACTTTTGCTTACACTTGCAGTTGAAAAGTCAATCATGCCGACCGTCAGCGTCGGAAGAGATCTTCTATTTGCTGCCATTGGAAGAACTTATACGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGTTTTGGAATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAACAGATATGATTTGCTCTGTCTTGAAGGACTTGCTCAAGCCCTGCGCATTTTTAATAAGCAGGAGGAGACACCCAGATATACATTAGCCAATATCAGCAGGGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCTTGATCCGTCCTTACATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGCGAGTTTCATTGATCTGCAAGAGAAACTTCATCAGAACATATGTCGACGAAGAAGTCTTGTTGCCATTGGAACACACGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCAACAGCTATAAACTTTGTGCCACTGAAACAGACGAAGAATTTCAGAGCTGATGAGCTAATGGCGTTCTATAAATCAGATTTAAAGCTGAGGAAGTACTTGCCCATAATAGAAAAATCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCACCAATTATCAATGGTGCACATTCGGCTATTACATTGAAGACAAAGAATGTGTTTATTGAATGCACTGCGACTGATCTGACAAAGGCAAATATTGTCTTGAATACTATGGTAACTATGTTTTCAACGCTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAGCTATCTCTCTACAATATGGAAGTTTCTCTGTCTTATATCAATAAGTGTATTGGAGTCTCATTGGAGGCAGAAGAGGTTATCAATTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCAGTATCTGGTGACAAGTCTAGTATAACTATATCTGTGCCCCCGACAAGGAGTGATGTGCTTCACCCATGTGACGTCATGGAGGATGTTGCTATTGCTTATGGGTATAATAACATCTCAAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAACTTCACCATGCTAAAGCGTGAAGATGATAAATCTACCGCTGTTGTCATTGGAAATCCTCGTTCAACTGATTTTGAGGTTGTACGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACACAATAAGGATCACCCAAAGCCCATAAAGTCCATTCTTACAATTATTCGTACTTTGTTATCTTATGACAATTGTTCTGTGCTATCATTCAAGGTGCAG 3603 41.69 MFLSSFLRFFTCIWQLQQHLTHGAKAKNPSSHKEKGKVCANHSQQRIQFVCSFLHLSSFCLVDRETRQKLQKFNSCLLLLLRIVLVLSSISKQKKTSKWLKIRLLALNHLGGVLAFCEIKFRVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKPVQVPIYDFKTSSRVGYRTLEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVPVDQIKAVISENHKESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLPKESPLLEEIQNIARVQRQIILQVDNLSNLLLEHLSERGRRGKADDEGRWRITDLESISTPLLLTLAVEKSIMPTVSVGRDLLFAAIGRTYTQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYTLANISRESMHKMHVKPETSLIRPYIVCAVLRDMTFDEAIYASFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADELMAFYKSDLKLRKYLPIIEKSPVYPILYDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPELSLYNMEVSLSYINKCIGVSLEAEEVINLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNISKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFTMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKSILTIIRTLLSYDNCSVLSFKVQ 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30780065 30794126 - CePI673135_06g017260.1 Cec06g1726 206463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1726 1201 Gene3D Bira Bifunctional Protein; Domain 2 1096 1180 IPR045864 -
Cec06g1726 1201 Gene3D - 805 1009 IPR020825 -
Cec06g1726 1201 PRINTS Uridine kinase signature 277 290 - -
Cec06g1726 1201 PRINTS Uridine kinase signature 118 135 - -
Cec06g1726 1201 PRINTS Uridine kinase signature 241 251 - -
Cec06g1726 1201 PRINTS Uridine kinase signature 185 200 - -
Cec06g1726 1201 FunFam phenylalanine--tRNA ligase beta subunit 805 1009 - -
Cec06g1726 1201 Pfam CYTH domain 305 457 IPR023577 -
Cec06g1726 1201 NCBIfam phenylalanine--tRNA ligase subunit beta 706 1178 IPR004531 GO:0000166(InterPro)|GO:0004826(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006432(InterPro)
Cec06g1726 1201 ProSiteProfiles B5 domain profile. 1008 1087 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cec06g1726 1201 SUPERFAMILY Putative DNA-binding domain 710 798 IPR009061 -
Cec06g1726 1201 Coils Coil 553 580 - -
Cec06g1726 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 289 IPR027417 -
Cec06g1726 1201 Gene3D - 1011 1085 - -
Cec06g1726 1201 FunFam Phenylalanyl-tRNA synthetase, beta subunit 1011 1085 - -
Cec06g1726 1201 Gene3D - 122 300 IPR027417 -
Cec06g1726 1201 SMART B3_4_2 823 985 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cec06g1726 1201 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 706 1178 IPR045060 GO:0004826(PANTHER)|GO:0004826(InterPro)|GO:0006432(PANTHER)|GO:0006432(InterPro)|GO:0009328(PANTHER)
Cec06g1726 1201 Pfam Phosphoribulokinase / Uridine kinase family 123 289 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cec06g1726 1201 SMART B5_2 1010 1082 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cec06g1726 1201 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 1095 1176 IPR041616 -
Cec06g1726 1201 Pfam Phe-tRNA synthetase beta subunit B1 domain 706 794 IPR040659 -
Cec06g1726 1201 Gene3D - 706 794 - -
Cec06g1726 1201 CDD UMPK_like 123 292 - -
Cec06g1726 1201 FunFam Phenylalanine--tRNA ligase beta subunit 706 794 - -
Cec06g1726 1201 ProSiteProfiles CYTH domain profile. 301 463 IPR023577 -
Cec06g1726 1201 SUPERFAMILY CYTH-like phosphatases 313 460 IPR033469 -
Cec06g1726 1201 SUPERFAMILY Class II aaRS and biotin synthetases 1079 1178 IPR045864 -
Cec06g1726 1201 SUPERFAMILY Putative DNA-binding domain 1012 1086 IPR009061 -
Cec06g1726 1201 Pfam B3/4 domain 843 966 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cec06g1726 1201 Pfam tRNA synthetase B5 domain 1013 1082 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1726 K00876 - - csv:101210506 1078.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2555 Cec-Chr5:36555987 Cec06g1726 Cec-Chr6:30780065 3.90E-225 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39