Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1747 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTTTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTCTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTTGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCGACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCCCTTTCCATGACAATGGACCAAATGCATCTACCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGGTGTGAATTCCAGTTCTCGTTCTTACTTTCACAACCCCTCATTAGGCAGTGAATACTTCAGTGTTTTTAGTGCAGCATCAACCGACCGACTATCAGGATTATCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAGTCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGGTTGTACCCGTGGTCCCATATCAACACCTGACACAAGTGATGCAGTAAATTTGGAAATTACAAATCGGATTTTCCATGGATCAAATTTGACAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1620 41.79 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESLMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASTTNMFKENSNQYPLSVGGVNSSSRSYFHNPSLGSEYFSVFSAASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQSHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEGCTRGPISTPDTSDAVNLEITNRIFHGSNLTDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30998129 31005491 + CePI673135_06g017470.1 Cec06g1747 206484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1747 539 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec06g1747 539 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec06g1747 539 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Cec06g1747 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 120 473 IPR044817 GO:0003677(InterPro)
Cec06g1747 539 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Cec06g1747 539 MobiDBLite consensus disorder prediction 1 24 - -
Cec06g1747 539 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1747 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1747 Cec-Chr6:30998129 Cec06g1994 Cec-Chr6:33168652 3.80E-34 dispersed
Cec10g1757 Cec-Chr10:32267735 Cec06g1747 Cec-Chr6:30998129 4.60E-34 transposed
Cec01g1706 Cec-Chr1:31693043 Cec06g1747 Cec-Chr6:30998129 2.80E-162 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1187 . 181 1009 SBP-box Gene Family AT2G47070 55.3 9.3e-241 830.1
Cec10g1187 . 25 1009 SBP-box Gene Family AT3G60030 54.2 1.2e-274 943.0
Cec06g0214 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Cec06g1747 . 152 292 SBP-box Gene Family AT1G69170 60.3 2.4e-41 166.8
Cec10g1187 . 181 1009 SBP-box Gene Family AT2G47070 55.3 9.3e-241 830.1
Cec06g1747 . 152 292 SBP-box Gene Family AT1G69170 60.3 2.4e-41 166.8
Cec10g1187 . 25 1009 SBP-box Gene Family AT3G60030 54.2 1.2e-274 943.0
Cec06g0214 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Cec06g0214 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29819 PF03110 SBP 1.10E-31 No_clan Cec TF