Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1747 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTTTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTCTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTTGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCGACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCCCTTTCCATGACAATGGACCAAATGCATCTACCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGGTGTGAATTCCAGTTCTCGTTCTTACTTTCACAACCCCTCATTAGGCAGTGAATACTTCAGTGTTTTTAGTGCAGCATCAACCGACCGACTATCAGGATTATCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAGTCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGGTTGTACCCGTGGTCCCATATCAACACCTGACACAAGTGATGCAGTAAATTTGGAAATTACAAATCGGATTTTCCATGGATCAAATTTGACAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1620 41.79 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESLMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASTTNMFKENSNQYPLSVGGVNSSSRSYFHNPSLGSEYFSVFSAASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQSHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEGCTRGPISTPDTSDAVNLEITNRIFHGSNLTDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30998129 31005491 + CePI673135_06g017470.1 Cec06g1747 206484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1747 539 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec06g1747 539 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec06g1747 539 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Cec06g1747 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 120 473 IPR044817 GO:0003677(InterPro)
Cec06g1747 539 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Cec06g1747 539 MobiDBLite consensus disorder prediction 1 24 - -
Cec06g1747 539 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1747 Cec-Chr6:30998129 Cec06g1994 Cec-Chr6:33168652 3.80E-34 dispersed
Cec10g1757 Cec-Chr10:32267735 Cec06g1747 Cec-Chr6:30998129 4.60E-34 transposed
Cec01g1706 Cec-Chr1:31693043 Cec06g1747 Cec-Chr6:30998129 2.80E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29819 PF03110 SBP 1.10E-31 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1747 - - - 0.0