Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1758 ATGGCGAACGCACCAACCGCTGGCGGAATAACAAAGATTTTGTCTAATCCATCCCCGGACTCCCCCTCCGATGTCCCGGACGTTGTGGTTCAGGTCATCGATCTCAAGGCGACGGGGAACCGCTACATGTTTACGGCAAACGATGGGGATATGAAGCTTAAAGCTATTCTTCCATCAAACCTGACGTCTGATGTCATTTCTGGAAACATTCAAAATTTGGGTCTTATTCGCATTCTTGACTACTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATTTAATCGTGACGAAATGCGAGGTGGTTTCTCCTGCTCTGGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCAGGTATTATTTTGAAACCGAAGCTAGAGGTTGATGATAAGAGCACATTTAACAATGGATCCGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACGAATATGGCACCAGCTGCACGGATGTCCATGACAAGGCGAGTTCATCCACTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACGGATAAGGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGATGCTGCAAAGAAGTTCTATGAGAAGTTTTCCCTTGGCAAAGTTTACTACATTTCCAGGGGAACTTTGAAAGTTGCTAATAAGAAATTCAAGACAGTTCAAAATGATTATGAAATGACTTTAAATGTGAATTCTCAAGTAGACGAGGTTAGCAATGAAGCTCCGTTCGTTCCTGAAATGAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGACCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAACGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTATGGAATGATCTTGCGACCACTGTGGGGCGGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACGATAAGCAGGAGCTCAATTATAATAAATCCAGACGTAAAGGAAGCACATGATTTGAGATCCTGGTATGACTCTGAAGGAAAAGCCGTATCTATGTCTTCTGTTAGCTCTGGCCTGAGCCCATCAACCAAGAGTGGGGCTAGGTCCATGTATTCTGACCGGATCTCCCTATCTCATATACTCCAAAACAAAACTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATTAGAGCATATGTTAGCTTTATCAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGCAACAAGAAGGTGACTGAAGCCATTGGGTCTGGATATTGGTGCGACAATTGTCAGAAAAACGATGAAGAATGCAGTTTAAGGTATATAATGGTTGTGAGAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATCATTGGATGCTCTGCCGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACTTGGGTTCCCCATTTATTTCGAGTTAGTGTTTCTCAAAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCAGTTGCTCCAGTTGACTTTGCTGCTGAGTCCAGATTTTTGCTAGAAGAGATAGCAAAGATGAAAGCTTCCTAA 1872 42.09 MANAPTAGGITKILSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTANDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKPEKYLIVTKCEVVSPALEKEVKTEVKKEEAGIILKPKLEVDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQRTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAAKKFYEKFSLGKVYYISRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAPFVPEMKYNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGRELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSIIINPDVKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGARSMYSDRISLSHILQNKTLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 31119824 31122965 - CePI673135_06g017580.1 Cec06g1758 206495
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1758 623 Pfam Replication protein A OB domain 309 404 IPR031657 -
Cec06g1758 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Cec06g1758 623 CDD RPA1_DBD_A 179 282 - -
Cec06g1758 623 Gene3D - 6 112 IPR012340 -
Cec06g1758 623 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Cec06g1758 623 MobiDBLite consensus disorder prediction 1 24 - -
Cec06g1758 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Cec06g1758 623 FunFam Replication protein A subunit 289 428 - -
Cec06g1758 623 NCBIfam replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cec06g1758 623 SUPERFAMILY Nucleic acid-binding proteins 178 285 IPR012340 -
Cec06g1758 623 CDD RPA1_DBD_C 454 619 IPR047192 -
Cec06g1758 623 Gene3D - 290 431 IPR012340 -
Cec06g1758 623 FunFam Replication protein A subunit 433 620 - -
Cec06g1758 623 FunFam Replication protein A subunit 5 114 - -
Cec06g1758 623 Coils Coil 538 558 - -
Cec06g1758 623 Gene3D - 174 282 IPR012340 -
Cec06g1758 623 FunFam Replication protein A subunit 176 285 - -
Cec06g1758 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cec06g1758 623 Pfam OB-fold nucleic acid binding domain 190 273 IPR004365 GO:0003676(InterPro)
Cec06g1758 623 Gene3D - 432 620 IPR012340 -
Cec06g1758 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Cec06g1758 623 CDD RPA1_DBD_B 312 418 - -
Cec06g1758 623 PANTHER REPLICATION FACTOR A 1, RFA1 178 597 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1758 Cec-Chr6:31119824 Cec11g0165 Cec-Chr11:1845642 1.20E-81 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1758 K07466 - csv:101208545 1132.86