Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1760 ATGCATCGCGAGGGAGGTGAAGAAGAACAAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGAATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCAAGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGGGGCGGTGGTTATGGTGGCGGGGGCGGCGGTTATGGTGGCGGGGGCTATGGTGGCGGCGGTGCTGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGAACAATTTGGCAGCAATGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA 921 49.4 MHREGGEEEQGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYANDRSRGFGGGGGGYGGGGGGYGGGGYGGGGAGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31129068 31135142 + CePI673135_06g017600.1 Cec06g1760 206497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1760 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723(InterPro)
Cec06g1760 306 PRINTS Eggshell protein signature 53 69 - -
Cec06g1760 306 PRINTS Eggshell protein signature 206 224 - -
Cec06g1760 306 PRINTS Eggshell protein signature 167 177 - -
Cec06g1760 306 PRINTS Eggshell protein signature 142 157 - -
Cec06g1760 306 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 43 137 IPR052462 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cec06g1760 306 MobiDBLite consensus disorder prediction 256 282 - -
Cec06g1760 306 Pfam RNA recognition motif 59 129 IPR000504 GO:0003723(InterPro)
Cec06g1760 306 Gene3D - 43 155 IPR012677 -
Cec06g1760 306 SUPERFAMILY RNA-binding domain, RBD 54 165 IPR035979 GO:0003676(InterPro)
Cec06g1760 306 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 26 154 - -
Cec06g1760 306 CDD RRM2_NsCP33_like 58 133 IPR048289 -
Cec06g1760 306 MobiDBLite consensus disorder prediction 256 306 - -
Cec06g1760 306 SMART rrm1_1 58 131 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1760 K12741 - - csv:101218446 276.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1760 Cec-Chr6:31129068 Cec10g2033 Cec-Chr10:35089352 5.60E-19 dispersed
Cec01g1794 Cec-Chr1:32388980 Cec06g1760 Cec-Chr6:31129068 1.60E-13 transposed
Cec02g1043 Cec-Chr2:17602065 Cec06g1760 Cec-Chr6:31129068 1.90E-19 transposed
Cec03g0093 Cec-Chr3:990067 Cec06g1760 Cec-Chr6:31129068 2.70E-07 transposed
Cec04g0978 Cec-Chr4:29426874 Cec06g1760 Cec-Chr6:31129068 2.10E-19 transposed
Cec05g1666 Cec-Chr5:27519588 Cec06g1760 Cec-Chr6:31129068 2.00E-13 transposed
Cec07g1798 Cec-Chr7:33661974 Cec06g1760 Cec-Chr6:31129068 4.40E-10 transposed
Cec10g1890 Cec-Chr10:33732911 Cec06g1760 Cec-Chr6:31129068 2.90E-20 transposed
Cec11g0459 Cec-Chr11:4868026 Cec06g1760 Cec-Chr6:31129068 2.10E-20 transposed
Cec01g1724 Cec-Chr1:31840762 Cec06g1760 Cec-Chr6:31129068 1.10E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92