Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1810 ATGGCGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGCACAATGGGAGGTGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTCACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGCCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGATGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.4 MAFLGFLLVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRMVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31564656 31565559 + CePI673135_06g018100.1 Cec06g1810 206547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1810 251 CDD DPBB_EXPA_N 28 154 - -
Cec06g1810 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cec06g1810 251 Gene3D - 156 251 IPR036749 -
Cec06g1810 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cec06g1810 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cec06g1810 251 FunFam Expansin 18 155 - -
Cec06g1810 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 FunFam Expansin 159 251 - -
Cec06g1810 251 PANTHER EXPANSIN-A15 19 251 IPR002963 GO:0009664(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cec06g1810 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cec06g1810 251 Gene3D - 16 155 IPR036908 -
Cec06g1810 251 SMART dpbb_1 64 149 IPR007112 -
Cec06g1810 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cec06g1810 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1810 Cec-Chr6:31564656 Cec11g0996 Cec-Chr11:16789062 1.50E-110 dispersed
Cec01g1758 Cec-Chr1:32142637 Cec06g1810 Cec-Chr6:31564656 2.70E-93 wgd
Cec05g2648 Cec-Chr5:37168435 Cec06g1810 Cec-Chr6:31564656 5.30E-116 wgd
Cec06g1810 Cec-Chr6:31564656 Cec09g1926 Cec-Chr9:36138553 1.30E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1810 - - - 0.0