Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1811 ATGGCCACTGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGCGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCGGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 51.38 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRALSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31568582 31569768 + CePI673135_06g018110.1 Cec06g1811 206548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1811 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cec06g1811 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Cec06g1811 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Cec06g1811 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cec06g1811 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1811 Cec-Chr6:31568582 Cec10g0627 Cec-Chr10:8406037 2.50E-25 dispersed
Cec03g1252 Cec-Chr3:27864299 Cec06g1811 Cec-Chr6:31568582 1.50E-39 transposed
Cec03g1553 Cec-Chr3:33686161 Cec06g1811 Cec-Chr6:31568582 1.80E-53 transposed
Cec08g0719 Cec-Chr8:18906287 Cec06g1811 Cec-Chr6:31568582 4.10E-23 transposed
Cec08g1644 Cec-Chr8:27790748 Cec06g1811 Cec-Chr6:31568582 1.00E-53 transposed
Cec09g2164 Cec-Chr9:38567499 Cec06g1811 Cec-Chr6:31568582 2.70E-40 transposed
Cec11g1417 Cec-Chr11:28360103 Cec06g1811 Cec-Chr6:31568582 1.60E-62 transposed
Cec01g1759 Cec-Chr1:32146271 Cec06g1811 Cec-Chr6:31568582 8.30E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1811 K08910 - csv:101222701 494.967