Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1815 ATGGCCTCCGTAGCTCTCAAAACCTTCACCGGCCTCCGCCAATCCTCGACGGAGAAGCCCCATTTCGTCACCCAAACGAAGGCCAACCCGAACCCCCAATTTCGGCGCCGATTTTATGTCGCCGCTGCTAAAACCAGCCCTAAAATCGCCGGCCGGAACCTCAGAGTCGCGGTGGTCGGCGGCGGTCCCGCTGGAGGATCGGCAGCCGAAGCTCTCGTCAGAGGCGGCGTTGAGACTTTCTTGTTCGAGAGGAAGCTCGACAACTGCAAGCCCTGCGGTGGTGCGATTCCGCTGTGTATGGTCGGCGAGTTCGATCTCCCGTTGGACCTGATTGACCGTCGTGTCACGAAGATGAAGATGATCTCTCCATCGAACGTCGCCGTTGACATTGGCCGAACCCTAAAACCTCACGAGTACATTGGGATGGTTCGGCGAGAGGTTCTGGACGCGTATCTTCGCAATCGAGCCGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTGATGAAATTGGAACTTCCGAAGGAACAAAATGCGCCGTATGTCCTTCATTACACTTCGTACGACGGGAAGAAAGGAGGCGTCGGGGAGAAGATGACATTGGAGGTCGACGCTGTGATCGGTGCCGACGGAGCTAATTCTCGCGTTGCCAAGGCCATTGACGCCGGCGATTACGATTACGCTATTGCATTTCAGGAGAGAATCAAAATCCCAGATGACAAAATGGTGTACTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTGTCGCCGGATTTTTACGGGTGGGTTTTCCCGAAATGCGACCATGTTGCAGTCGGCACCGGCACGGTGACTCACAAGGCCGATATCAAGAAATTTCAAATAGCCACACGAAATAGGGCAAAGGACAAGATATTAGGAGGGAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAACACCCTCGTCCACGACGGCTAGCGGGAAGAGTGGCACTTGTCGGCGATGCAGCTGGGTATGTGACGAAATGCTCCGGTGAGGGCATATATTTCGCAGCGAAGAGTGGGAGAATGTGCGCAGAGGCAATCGTCGAGGGATCAGAAAATGGGAAAAGAATGGTGGAGGAATCAGACCTGAGGAAGTACTTAGAGAAATGGGATAAAACTTACTGGCCGACTTATAAGGTTCTGGATGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCTAGAGAAGCTTTTGTTGAGATGTGCGCCGACGAGTATGTGCAGAAGATGACATTCGACAGTTACTTGTATAAGAGAGTGGTGCCTGGGAATCCATTGGATGACTTGAAATTGGCTGTGAATACCATTGGGAGCTTGGTGAGAGCTAATGCTCTGAAGAGGGAGATGGAGAAAGGACTAGATTCGCATTGCGGCGGTGTATTCGGTACACAGAAAGAGAAAGGGAAACAATATAAAGCTCGGCTGTTCAAAAAGAAGTGCTACGTCCAAGGCTTTCATGCGGAGAATTCTACGACCCACAATCCCCTATTCGAATACCCTTTTGAGCCCTTAAATCTCCAATTACTCACTCTCCTCTTCCATTTCCAGCTAGAATTTTTCTGGGTTTCAAGGACTTCTGTTTTCTTGAAGGAATCATTTGAACATCTTGTTGATCTGTATGGAACACACTTGTTGAAGTTGGAGCAGTTTCTTGAGTCAGATATGGCAGCAACATCAGCAACTATTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAACTCAACTCATTTTCCCAATCAAAGTCTGCTAGCTTAAGAATCAATTCACAAGATACTCTTCAGAGCTTTTGTGGCCTCAAGGCAGCTTCATCTCTTCATTGTAACTCAGAGTCATCTTTCCTAGGGAAACAGAGCAGTGTTGCCCTATGGCGTTGTCTTGCTCCTTCAGCTCAAAGAGTGAACCAGAATGTATGCAAAAATCTTCAACCTCAAGCTTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTTTGGCACTTCTCATCAAGATGTCGCCATTAGTTGCCACACTAAACCTTTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGCCACTGCAACACTCCCTCAAAAGTTCAGGATTTCACTGGACCTTCTGAATTAGCCAATGCTTTAAAAGGTGTGGATGTTGTTGTCATACCTGCTGGGGTTCCAAGAAAGCCTGGTATGACTCGTGATGACCTCTTCAACATAAATGCCGGCATAGTGAAAAGTTTGGTCGAGGCGGTTGCTGATAATTGTCCCGATGCTTTCATCCATATCATTAGCAACCCTGTGAACTCAACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAAGGCGTGTATGATCCAAAGAAGCTTTTTGGGGTTACTACATTGGATGTTGTTCGGGCAAACACCTTCGTTGCTGAAAAGAAGAACCTTAAACTGATCGATGTTGATGTCCCAGTTGTTGGGGGACATGCAGGAATAACAATTCTTCCTTTGCTATCAAAGACAAGACCTTCAGTGAGTTTTACAGATGAACAAATTCAAGAACTGACTGTTAGGATTCAAAATGCGGGAACCGAAGTTGTGGAAGCGAAGGCAGGGGCAGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGACGGAGATAGTGATGTATATGAATGCACTTTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGGAGGAAAGGAATTGAAGCCTTCGTAACGTCTGATCTCCAGGGTTTATCTGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAAAAGCAAGCTGTTGCTGCTTAA 2934 47.55 MASVALKTFTGLRQSSTEKPHFVTQTKANPNPQFRRRFYVAAAKTSPKIAGRNLRVAVVGGGPAGGSAAEALVRGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLVMKLELPKEQNAPYVLHYTSYDGKKGGVGEKMTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLDDLKLAVNTIGSLVRANALKREMEKGLDSHCGGVFGTQKEKGKQYKARLFKKKCYVQGFHAENSTTHNPLFEYPFEPLNLQLLTLLFHFQLEFFWVSRTSVFLKESFEHLVDLYGTHLLKLEQFLESDMAATSATILSIGATASLNTKLNSFSQSKSASLRINSQDTLQSFCGLKAASSLHCNSESSFLGKQSSVALWRCLAPSAQRVNQNVCKNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLSEYEQKALEALKPELKASIEKGIAFTQKQAVAA 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31592642 31598079 + CePI673135_06g018150.1 Cec06g1815 206552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1815 977 Gene3D - 804 975 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cec06g1815 977 NCBIfam malate dehydrogenase 660 970 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cec06g1815 977 NCBIfam geranylgeranyl diphosphate reductase 55 452 IPR010253 GO:0015979(InterPro)|GO:0015995(InterPro)|GO:0045550(InterPro)
Cec06g1815 977 SUPERFAMILY FAD/NAD(P)-binding domain 54 436 IPR036188 -
Cec06g1815 977 Pfam lactate/malate dehydrogenase, NAD binding domain 660 802 IPR001236 GO:0016491(InterPro)
Cec06g1815 977 CDD MDH_glyoxysomal_mitochondrial 659 969 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cec06g1815 977 Gene3D - 657 803 - -
Cec06g1815 977 FunFam Malate dehydrogenase 657 803 - -
Cec06g1815 977 FunFam Malate dehydrogenase 804 972 - -
Cec06g1815 977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Cec06g1815 977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 - -
Cec06g1815 977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Cec06g1815 977 FunFam Geranylgeranyl diphosphate reductase 53 460 - -
Cec06g1815 977 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 51 456 IPR050407 GO:0009535(PANTHER)|GO:0015995(PANTHER)|GO:0045550(PANTHER)
Cec06g1815 977 SUPERFAMILY LDH C-terminal domain-like 803 970 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cec06g1815 977 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 652 803 IPR036291 -
Cec06g1815 977 NCBIfam geranylgeranyl reductase 54 452 IPR011774 GO:0045550(InterPro)
Cec06g1815 977 ProSitePatterns Malate dehydrogenase active site signature. 803 815 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Cec06g1815 977 Gene3D - 54 466 IPR036188 -
Cec06g1815 977 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 804 969 IPR022383 GO:0016616(InterPro)
Cec06g1815 977 NCBIfam geranylgeranyl reductase family protein 56 358 IPR011777 GO:0016628(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1815 K10960 - - csv:101221755 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0585 Cec-Chr2:5683588 Cec06g1815 Cec-Chr6:31592642 1.40E-214 dispersed
Cec02g2545 Cec-Chr2:42479094 Cec06g1815 Cec-Chr6:31592642 2.30E-162 dispersed
Cec06g1815 Cec-Chr6:31592642 Cec07g1093 Cec-Chr7:26116372 4.50E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36